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Issues: MetabolicAtlas/standard-GEM

Focus of the next release
#23 opened Sep 8, 2020 by mihai-sysbio
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13 Open 9 Closed
13 Open 9 Closed
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Issues list

GSMM as an alternative to GEM
#39 opened Oct 26, 2023 by mihai-sysbio
Clarify naming convention for model files
#38 opened Oct 26, 2023 by mihai-sysbio
Support for repositories with multiple GEMs (f. ex. strain collections) enhancement New feature or request
#37 opened Nov 2, 2022 by famosab
4 tasks done
1
Automated tests via github actions for repositories generated from this template
#36 opened Oct 28, 2022 by famosab
4 tasks done
3
template for gh pages landing page in /docs on master
#31 opened Jul 28, 2021 by mihai-sysbio
Revise templates in .github
#29 opened Oct 29, 2020 by mihai-sysbio
@mihai-sysbio
Encourage the use of dedicated fields rather than semantic overloading
#27 opened Sep 15, 2020 by draeger
12
Focus of the next release
#23 opened Sep 8, 2020 by mihai-sysbio
Documentation of model development workflow workflow for curating GEM-type repos
#20 opened Aug 27, 2020 by sulheim
16
External standard subsystem for each reaction to make it comparable from different GEMs discussion Discussion for the optimal solutions
#19 opened Aug 24, 2020 by hongzhonglu
10
Encourage the use of COMBINE archives as exchange format for the model and its execution modelFormat Requests for model file formats
#18 opened Aug 13, 2020 by draeger
6
Consider using more powerful templating, e.g., cookiecutter
#11 opened Aug 13, 2020 by Midnighter
10
manage dependencies dependencies dependency issues relevant to GEM-type repos discussion Discussion for the optimal solutions
#10 opened Jul 3, 2020 by mihai-sysbio
ProTip! Follow long discussions with comments:>50.