python312Packages.neurokit2: init at 0.2.10 and python312Packages.biosppy: init at 2.2.2

[genga898]

Closes #371375

Add neurokit2 and biosppy

Tests for neurokit get stuck on the second test, have been trying to build it for couple of hours, hence the omission of the test checks, was not able to determine if all the tests pass or fail.

Biosppy is a dependency of the neurokit python lib.

Things done

• Built on platform(s)
  • x86_64-linux
  • aarch64-linux
  • x86_64-darwin
  • aarch64-darwin
• For non-Linux: Is sandboxing enabled in nix.conf? (See Nix manual)
  • sandbox = relaxed
  • sandbox = true
• Tested, as applicable:
  • NixOS test(s) (look inside nixos/tests)
  • and/or package tests
  • or, for functions and "core" functionality, tests in lib/tests or pkgs/test
  • made sure NixOS tests are linked to the relevant packages
• Tested compilation of all packages that depend on this change using nix-shell -p nixpkgs-review --run "nixpkgs-review rev HEAD". Note: all changes have to be committed, also see nixpkgs-review usage
• Tested basic functionality of all binary files (usually in ./result/bin/)
• 25.05 Release Notes (or backporting 24.11 and 25.05 Release notes)
  • (Package updates) Added a release notes entry if the change is major or breaking
  • (Module updates) Added a release notes entry if the change is significant
  • (Module addition) Added a release notes entry if adding a new NixOS module
• Fits CONTRIBUTING.md.

---

Add a 👍 reaction to pull requests you find important.

[bcdarwin]

Typo in PR title: should be neurokit2.

After addressing these remaining issues, lease rewrite your commits so that one addresses biosppy and one addresses neurokit2.

I think it should be possible to enable the neurokit2 tests, potentially disabling one if it's hanging, although mne is broken right now; see #370107.

[genga898]

Typo in PR title: should be neurokit2.

After addressing these remaining issues, lease rewrite your commits so that one addresses biosppy and one addresses neurokit2.

I think it should be possible to enable the neurokit2 tests, potentially disabling one if it's hanging, although mne is broken right now; see #370107.

I got the tests to work by disabling the failing ones and the one that was causing it to get stuck, the one's that pass do not meet the 50% mark, only at 22% meaning the build still fails

[bcdarwin]

Thanks, looks almost ready to go!

[GaetanLepage]

nixpkgs-review result

Generated using nixpkgs-review.

Command: nixpkgs-review pr 371449

---

x86_64-linux

✅ 8 packages built:

• python312Packages.biosppy
• python312Packages.biosppy.dist
• python312Packages.neurokit2
• python312Packages.neurokit2.dist
• python313Packages.biosppy
• python313Packages.biosppy.dist
• python313Packages.neurokit2
• python313Packages.neurokit2.dist

---

aarch64-linux

✅ 8 packages built:

• python312Packages.biosppy
• python312Packages.biosppy.dist
• python312Packages.neurokit2
• python312Packages.neurokit2.dist
• python313Packages.biosppy
• python313Packages.biosppy.dist
• python313Packages.neurokit2
• python313Packages.neurokit2.dist

---

x86_64-darwin

❌ 8 packages failed to build:

• python312Packages.biosppy
• python312Packages.biosppy.dist
• python312Packages.neurokit2
• python312Packages.neurokit2.dist
• python313Packages.biosppy
• python313Packages.biosppy.dist
• python313Packages.neurokit2
• python313Packages.neurokit2.dist

---

aarch64-darwin

❌ 8 packages failed to build:

• python312Packages.biosppy
• python312Packages.biosppy.dist
• python312Packages.neurokit2
• python312Packages.neurokit2.dist
• python313Packages.biosppy
• python313Packages.biosppy.dist
• python313Packages.neurokit2
• python313Packages.neurokit2.dist

[GaetanLepage]

Failing on darwin with:

Traceback (most recent call last):
  File "<string>", line 1, in <module>
  File "<string>", line 1, in <lambda>
  File "/nix/store/8zc3wcplydp8gsxms24scpzdca438dk5-python3-3.12.8/lib/python3.12/importlib/__init__.py", line 90, in import_module
    return _bootstrap._gcd_import(name[level:], package, level)
           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "<frozen importlib._bootstrap>", line 1387, in _gcd_import
  File "<frozen importlib._bootstrap>", line 1360, in _find_and_load
  File "<frozen importlib._bootstrap>", line 1331, in _find_and_load_unlocked
  File "<frozen importlib._bootstrap>", line 935, in _load_unlocked
  File "<frozen importlib._bootstrap_external>", line 999, in exec_module
  File "<frozen importlib._bootstrap>", line 488, in _call_with_frames_removed
  File "/nix/store/z21xzks0wrcxmz6xgx1pijzqiadi1k69-python3.12-biosppy-2.2.2/lib/python3.12/site-packages/biosppy/inter_plotting/__init__.py", line 18, in <module>
    from . import ecg, acc
  File "/nix/store/z21xzks0wrcxmz6xgx1pijzqiadi1k69-python3.12-biosppy-2.2.2/lib/python3.12/site-packages/biosppy/inter_plotting/ecg.py", line 20, in <module>
    from tkinter import *
  File "/nix/store/8zc3wcplydp8gsxms24scpzdca438dk5-python3-3.12.8/lib/python3.12/tkinter/__init__.py", line 38, in <module>
    import _tkinter # If this fails your Python may not be configured for Tk
    ^^^^^^^^^^^^^^^
ModuleNotFoundError: No module named '_tkinter'

[genga898]

Failing on darwin with:

Traceback (most recent call last):
  File "<string>", line 1, in <module>
  File "<string>", line 1, in <lambda>
  File "/nix/store/8zc3wcplydp8gsxms24scpzdca438dk5-python3-3.12.8/lib/python3.12/importlib/__init__.py", line 90, in import_module
    return _bootstrap._gcd_import(name[level:], package, level)
           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "<frozen importlib._bootstrap>", line 1387, in _gcd_import
  File "<frozen importlib._bootstrap>", line 1360, in _find_and_load
  File "<frozen importlib._bootstrap>", line 1331, in _find_and_load_unlocked
  File "<frozen importlib._bootstrap>", line 935, in _load_unlocked
  File "<frozen importlib._bootstrap_external>", line 999, in exec_module
  File "<frozen importlib._bootstrap>", line 488, in _call_with_frames_removed
  File "/nix/store/z21xzks0wrcxmz6xgx1pijzqiadi1k69-python3.12-biosppy-2.2.2/lib/python3.12/site-packages/biosppy/inter_plotting/__init__.py", line 18, in <module>
    from . import ecg, acc
  File "/nix/store/z21xzks0wrcxmz6xgx1pijzqiadi1k69-python3.12-biosppy-2.2.2/lib/python3.12/site-packages/biosppy/inter_plotting/ecg.py", line 20, in <module>
    from tkinter import *
  File "/nix/store/8zc3wcplydp8gsxms24scpzdca438dk5-python3-3.12.8/lib/python3.12/tkinter/__init__.py", line 38, in <module>
    import _tkinter # If this fails your Python may not be configured for Tk
    ^^^^^^^^^^^^^^^
ModuleNotFoundError: No module named '_tkinter'

I could add it as an optional dependency on darwin builds but I don't have a machine to test for other failures

[GaetanLepage]

I could add it as an optional dependency on darwin builds but I don't have a machine to test for other failures

Give it a try, I can test it for you.
If it still doesn't work, we can add:

  badPlatforms = [
    lib.systems.inspect.patterns.isDarwin
  ];

[genga898]

I could add it as an optional dependency on darwin builds but I don't have a machine to test for other failures

Give it a try, I can test it for you. If it still doesn't work, we can add:

  badPlatforms = [
    lib.systems.inspect.patterns.isDarwin
  ];

Just pushed an update, let me know if it works then I clean up my commit tree

[GaetanLepage]

nixpkgs-review result

Generated using nixpkgs-review.

Command: nixpkgs-review pr 371449

---

x86_64-linux

✅ 8 packages built:

• python312Packages.biosppy
• python312Packages.biosppy.dist
• python312Packages.neurokit2
• python312Packages.neurokit2.dist
• python313Packages.biosppy
• python313Packages.biosppy.dist
• python313Packages.neurokit2
• python313Packages.neurokit2.dist

---

aarch64-linux

✅ 8 packages built:

• python312Packages.biosppy
• python312Packages.biosppy.dist
• python312Packages.neurokit2
• python312Packages.neurokit2.dist
• python313Packages.biosppy
• python313Packages.biosppy.dist
• python313Packages.neurokit2
• python313Packages.neurokit2.dist

---

x86_64-darwin

❌ 4 packages failed to build:

• python312Packages.neurokit2
• python312Packages.neurokit2.dist
• python313Packages.neurokit2
• python313Packages.neurokit2.dist

✅ 4 packages built:

• python312Packages.biosppy
• python312Packages.biosppy.dist
• python313Packages.biosppy
• python313Packages.biosppy.dist

---

aarch64-darwin

❌ 4 packages failed to build:

• python312Packages.neurokit2
• python312Packages.neurokit2.dist
• python313Packages.neurokit2
• python313Packages.neurokit2.dist

✅ 4 packages built:

• python312Packages.biosppy
• python312Packages.biosppy.dist
• python313Packages.biosppy
• python313Packages.biosppy.dist

[GaetanLepage]

So, it has helped. Now a test is crashing in neurokit. Let me see which one it is.

[GaetanLepage]

nixpkgs-review result

Generated using nixpkgs-review.

Command: nixpkgs-review pr 371449

---

x86_64-linux

✅ 8 packages built:

• python312Packages.biosppy
• python312Packages.biosppy.dist
• python312Packages.neurokit2
• python312Packages.neurokit2.dist
• python313Packages.biosppy
• python313Packages.biosppy.dist
• python313Packages.neurokit2
• python313Packages.neurokit2.dist

---

aarch64-linux

✅ 8 packages built:

• python312Packages.biosppy
• python312Packages.biosppy.dist
• python312Packages.neurokit2
• python312Packages.neurokit2.dist
• python313Packages.biosppy
• python313Packages.biosppy.dist
• python313Packages.neurokit2
• python313Packages.neurokit2.dist

---

x86_64-darwin

✅ 8 packages built:

• python312Packages.biosppy
• python312Packages.biosppy.dist
• python312Packages.neurokit2
• python312Packages.neurokit2.dist
• python313Packages.biosppy
• python313Packages.biosppy.dist
• python313Packages.neurokit2
• python313Packages.neurokit2.dist

---

aarch64-darwin

✅ 8 packages built:

• python312Packages.biosppy
• python312Packages.biosppy.dist
• python312Packages.neurokit2
• python312Packages.neurokit2.dist
• python313Packages.biosppy
• python313Packages.biosppy.dist
• python313Packages.neurokit2
• python313Packages.neurokit2.dist

[genga898]

Ok let me fix my commit tree