Update runall

Noble-Lab · Jul 26, 2024 · c669560 · c669560
1 parent 4d283e9
commit c669560
Showing 1 changed file with 6 additions and 6 deletions.
diff --git a/results/wnoble/2024-05-12pipeline/runall b/results/wnoble/2024-05-12pipeline/runall
@@ -210,11 +210,11 @@ for benchmark in $benchmark1 $benchmark2 $benchmark3 $benchmark4; do
 done
 
 # Package everything up into zip files.
-#zip nine-species.data.zip \
-#    $root/{Api,Bac,Can,H.-,Met,Mus,Sac,Sol,Vig}*/*.mgf \
-#    $root/proteomes/*.fasta
+zip nine-species-data.zip \
+    $root/{Api,Bac,Can,H.-,Met,Mus,Sac,Sol,Vig}*/*.mgf \
+    $root/proteomes/*.fasta
 
-zip nine-species.intermediate.zip \
+zip nine-species-intermediate.zip \
     {Api,Bac,Can,H.-,Met,Mus,Sac,Sol,Vig}*/tide-index/tide-index.log.txt \
     {Api,Bac,Can,H.-,Met,Mus,Sac,Sol,Vig}*/tide-search.target.txt \
     {Api,Bac,Can,H.-,Met,Mus,Sac,Sol,Vig}*/tide-search.decoy.txt \
@@ -225,13 +225,13 @@ zip nine-species.intermediate.zip \
 for benchmark in $benchmark1 $benchmark2 $benchmark3 $benchmark4; do
 
     # Make a version with one MGF per species.
-    zip nine-species.$benchmark.zip \
+    zip $benchmark.zip \
         $benchmark.html \
         $benchmark.txt \
         $benchmark.mgf
 
     # Make a version with separate MGF files.
-    zip nine-species.$benchmark-separate.zip \
+    zip $benchmark-separate.zip \
         $benchmark.html \
         $benchmark.txt \
         $benchmark/*.mgf