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@OHDSI

Observational Health Data Sciences and Informatics

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  1. CommonDataModel Public

    Definition and DDLs for the OMOP Common Data Model (CDM)

    HTML 941 459

  2. Vocabulary-v5.0 Public

    Build process for the OHDSI Standardized Vocabularies. Currently not available as independent release.

    PLpgSQL 235 75

  3. Atlas Public

    ATLAS is an open source software tool for researchers to conduct scientific analyses on standardized observational data

    JavaScript 281 140

  4. Cyclops Public

    Cyclops (Cyclic coordinate descent for logistic, Poisson and survival analysis) is an R package for performing large scale regularized regressions.

    C++ 39 32

  5. CohortMethod Public

    An R package for performing new-user cohort studies in an observational database in the OMOP Common Data Model.

    R 85 62

  6. PatientLevelPrediction Public

    An R package for performing patient level prediction in an observational database in the OMOP Common Data Model.

    R 191 90

Repositories

Showing 10 of 323 repositories
  • d2e Public

    Data2Evidence is an end-to-end solution for management of OMOP data - https://data2evidence.org

    TypeScript 13 Apache-2.0 0 0 14 Updated Apr 11, 2025
  • FeatureExtraction Public

    An R package for generating features (covariates) for a cohort using data in the Common Data Model.

    R 62 61 44 (1 issue needs help) 7 Updated Apr 11, 2025
  • Eunomia Public

    An R package that facilitates access to a variety of OMOP CDM sample data sets.

    R 43 11 14 2 Updated Apr 11, 2025
  • ClinicalTrialsWG-TB Public

    Clinical Trials Work Group ETL for Tuberculosis studies

    Python 1 Apache-2.0 0 6 1 Updated Apr 11, 2025
  • Cyclops Public

    Cyclops (Cyclic coordinate descent for logistic, Poisson and survival analysis) is an R package for performing large scale regularized regressions.

    C++ 39 32 20 1 Updated Apr 10, 2025
  • drat Public

    drat repository for OHDSI R packages

    5 7 0 0 Updated Apr 10, 2025
  • PatientLevelPrediction Public

    An R package for performing patient level prediction in an observational database in the OMOP Common Data Model.

    R 191 90 25 (1 issue needs help) 4 Updated Apr 10, 2025
  • OmopSketch Public
    R 2 Apache-2.0 0 11 5 Updated Apr 10, 2025
  • OmopViewer Public
    R 3 Apache-2.0 0 18 2 Updated Apr 10, 2025
  • webapi-shiny Public

    [Under development] Holds dependencies for WebAPI Shiny apps

    R 1 Apache-2.0 0 0 0 Updated Apr 10, 2025