Repositories list

• ETL-LambdaBuilder

  Public
  CDM Builder leveraging AWS Lambda

  C#

  •

  Apache License 2.0

  •15•15•0•1•Updated Jan 31, 2025Jan 31, 2025

• drat

  Public
  drat repository for OHDSI R packages

  7•5•0•0•Updated Jan 31, 2025Jan 31, 2025

• DatabaseConnector

  Public
  An R package for connecting to databases using JDBC.

  hades

  R

  •84•55•33•2•Updated Jan 31, 2025Jan 31, 2025

• dbt-synthea

  Public
  [Under development] A dbt ETL project to convert a Synthea synthetic data set into the OMOP CDM

  Python

  •

  Apache License 2.0

  •8•20•23•3•Updated Jan 31, 2025Jan 31, 2025

• SelfControlledCaseSeries

  Public
  An R package for performing Self-Controlled Case Series (SCCS) analyses in an observational database in the OMOP Common Data Model.

  hades

  R

  •8•13•11•0•Updated Jan 31, 2025Jan 31, 2025

• PhenotypeR

  Public
  R

  •

  Apache License 2.0

  •0•2•36•0•Updated Jan 30, 2025Jan 30, 2025

• ImageWG

  Public
  Repository for medical image working group

  Rich Text Format

  •

  Apache License 2.0

  •4•8•5•0•Updated Jan 30, 2025Jan 30, 2025

• Vocabulary-v5.0

  Public
  Build process for the OHDSI Standardized Vocabularies. Currently not available as independent release.

  PLpgSQL

  •

  The Unlicense

  •75•229•222•11•Updated Jan 30, 2025Jan 30, 2025

• PatientLevelPrediction

  Public
  An R package for performing patient level prediction in an observational database in the OMOP Common Data Model.

  hades

  HTML

  •90•189•26•1•Updated Jan 30, 2025Jan 30, 2025

• CohortConstructor

  Public
  R

  •

  Apache License 2.0

  •0•1•40•3•Updated Jan 30, 2025Jan 30, 2025

• context

  Public
  A python library to create knowledge graphs for context-aware prediction modeling and more.

  Python

  •0•0•1•0•Updated Jan 30, 2025Jan 30, 2025

• SqlRender

  Public
  This is an R package and Java library for rendering parameterized SQL, and translating it to different SQL dialects.

  hades

  R

  •

  Other

  •79•82•10•0•Updated Jan 30, 2025Jan 30, 2025

• Hades

  Public
  Health Analytics Data-to-Evidence Suite (HADES): A collection of R packages for performing analytics against the Common Data Model.

  hades

  R

  •

  Apache License 2.0

  •13•24•15•5•Updated Jan 30, 2025Jan 30, 2025

• Arachne

  Public
  Arachne Data Node web application

  TypeScript

  •

  Apache License 2.0

  •1•1•11•1•Updated Jan 30, 2025Jan 30, 2025

• CureIdRegistry

  Public
  TSQL

  •9•14•3•3•Updated Jan 30, 2025Jan 30, 2025

• Atlas

  Public
  ATLAS is an open source software tool for researchers to conduct scientific analyses on standardized observational data

  JavaScript

  •

  Apache License 2.0

  •139•277•213•21•Updated Jan 29, 2025Jan 29, 2025

• WebAPI

  Public
  OHDSI WebAPI contains all OHDSI services that can be called from OHDSI applications

  Java

  •

  Apache License 2.0

  •168•135•131•24•Updated Jan 29, 2025Jan 29, 2025

• TheBookOfOhdsiInJapanese

  Public
  A translation of https://github.com/OHDSI/TheBookOfOhdsi into Japanese

  R

  •

  Creative Commons Zero v1.0 Universal

  •0•0•0•0•Updated Jan 29, 2025Jan 29, 2025

• AresIndexer

  Public
  R package that creates the index and relevant files for an Ares deployment.

  R

  •

  Apache License 2.0

  •5•1•16•0•Updated Jan 29, 2025Jan 29, 2025

• OmopSketch

  Public
  R

  •

  Apache License 2.0

  •0•1•5•0•Updated Jan 29, 2025Jan 29, 2025

• FhirToCdm

  Public
  Conversion from FHIR HL7 to OMOP CDM

  C#

  •

  Apache License 2.0

  •6•16•0•0•Updated Jan 29, 2025Jan 29, 2025

• OncologyWG

  Public
  Oncology Working Group Repository

  Ruby

  •

  Apache License 2.0

  •24•56•164•19•Updated Jan 28, 2025Jan 28, 2025

• ArachneExecutionEngine

  Public
  Arachne Execution Engine is a component used to execute remote SQL or R code. It is used by both Arachne Data Node as well as WebAPI

  PLpgSQL

  •8•8•1•2•Updated Jan 28, 2025Jan 28, 2025

• MethodEvaluation

  Public
  An R package for the evaluation of estimation methods

  hades

  R

  •6•8•3•0•Updated Jan 27, 2025Jan 27, 2025

• omock

  Public
  R

  •

  Apache License 2.0

  •1•2•4•0•Updated Jan 27, 2025Jan 27, 2025

• Cyclops

  Public
  Cyclops (Cyclic coordinate descent for logistic, Poisson and survival analysis) is an R package for performing large scale regularized regressions.

  hades

  C++

  •33•39•20•1•Updated Jan 27, 2025Jan 27, 2025

• WhiteRabbit

  Public
  WhiteRabbit is a small application that can be used to analyse the structure and contents of a database as preparation for designing an ETL. It comes with RabbitInAHat, an application for interactive design of an ETL to the OMOP Common Data Model with the help of the the scan report generated by White Rabbit.

  Java

  •

  Apache License 2.0

  •91•185•107•5•Updated Jan 25, 2025Jan 25, 2025

• Strategus

  Public
  An R package for coordinating and executing analytics using HADES modules

  R

  •11•6•16•5•Updated Jan 24, 2025Jan 24, 2025

• ClinicalCharacteristics

  Public
  [under development] table shell approach to OMOP characterization

  R

  •

  Apache License 2.0

  •1•0•11•0•Updated Jan 24, 2025Jan 24, 2025

• DeepPatientLevelPrediction

  Public
  An R package for performing patient level prediction using deep learning in an observational database in the OMOP Common Data Model.

  hadesdeep-learning

  R

  •4•12•23•2•Updated Jan 24, 2025Jan 24, 2025