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@OHDSI Observational Health Data Sciences and Informatics

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    305 repositories

    • ArachneCommons

      Public
      Commons module contains common code re-used between all Arachne components
      Java
      •8•3•1•7•Updated Oct 12, 2024Oct 12, 2024

    • ArachneExecutionEngine

      Public
      Arachne Execution Engine is a component used to execute remote SQL or R code. It is used by both Arachne Data Node as well as WebAPI
      PLpgSQL
      •8•8•1•0•Updated Oct 11, 2024Oct 11, 2024

    • ClinicalCharacteristics

      Public
      [under development] table shell approach to OMOP characterization
      R
      •
      Apache License 2.0
      •0•0•7•1•Updated Oct 11, 2024Oct 11, 2024

    • HealthSystems

      Public
      [Under development] Health Systems Interest Group
      PLpgSQL
      •
      Apache License 2.0
      •0•0•0•0•Updated Oct 11, 2024Oct 11, 2024

    • FeatureExtraction

      Public
      An R package for generating features (covariates) for a cohort using data in the Common Data Model.
      hades
      R
      •58•60•40•7•Updated Oct 11, 2024Oct 11, 2024

    • Vocabulary-v5.0

      Public
      Build process for the OHDSI Standardized Vocabularies. Currently not available as independent release.
      PLpgSQL
      •
      The Unlicense
      •75•218•216•18•Updated Oct 11, 2024Oct 11, 2024

    • WebAPI

      Public
      OHDSI WebAPI contains all OHDSI services that can be called from OHDSI applications
      Java
      •
      Apache License 2.0
      •166•129•134•22•Updated Oct 11, 2024Oct 11, 2024

    • CohortConstructor

      Public
      R
      •
      Apache License 2.0
      •0•1•37•3•Updated Oct 11, 2024Oct 11, 2024

    • OhdsiShinyModules

      Public
      An R package containing Shiny modules used by various OHDSI Shiny apps
      R
      •11•8•51•5•Updated Oct 11, 2024Oct 11, 2024

    • dbt-synthea

      Public
      [Under development] A dbt ETL project to convert a Synthea synthetic data set into the OMOP CDM
      Python
      •
      Apache License 2.0
      •3•10•14•3•Updated Oct 11, 2024Oct 11, 2024

    • omock

      Public
      R
      •
      Apache License 2.0
      •1•2•4•1•Updated Oct 11, 2024Oct 11, 2024

    • EmpiricalCalibration

      Public
      An R package for performing empirical calibration of observational study estimates
      hades
      R
      •9•10•2•0•Updated Oct 11, 2024Oct 11, 2024

    • ETL-LambdaBuilder

      Public
      CDM Builder leveraging AWS Lambda
      C#
      •
      Apache License 2.0
      •15•14•1•2•Updated Oct 11, 2024Oct 11, 2024

    • Arachne

      Public
      Arachne Data Node web application
      TypeScript
      •
      Apache License 2.0
      •1•1•14•1•Updated Oct 11, 2024Oct 11, 2024

    • DatabaseConnector

      Public
      An R package for connecting to databases using JDBC.
      hades
      R
      •80•54•28•0•Updated Oct 11, 2024Oct 11, 2024

    • DeepPatientLevelPrediction

      Public
      An R package for performing patient level prediction using deep learning in an observational database in the OMOP Common Data Model.
      hadesdeep-learning
      R
      •4•11•19•1•Updated Oct 11, 2024Oct 11, 2024

    • PatientLevelPrediction

      Public
      An R package for performing patient level prediction in an observational database in the OMOP Common Data Model.
      hades
      HTML
      •88•187•63•2•Updated Oct 11, 2024Oct 11, 2024

    • drat

      Public
      drat repository for OHDSI R packages
      7•5•0•0•Updated Oct 10, 2024Oct 10, 2024

    • PheValuator

      Public
      An R package for evaluating phenotype algorithms.
      R
      •6•17•9•1•Updated Oct 10, 2024Oct 10, 2024

    • OmopSketch

      Public
      R
      •
      Apache License 2.0
      •0•2•19•2•Updated Oct 10, 2024Oct 10, 2024

    • Ares

      Public
      A Research Exploration System
      Vue
      •
      Apache License 2.0
      •5•12•41•2•Updated Oct 10, 2024Oct 10, 2024

    • ResultModelManager

      Public
      RMM is an R package designed to handle common ohdsi results data management functions by providing a common API for data model migrations and definitions
      R
      •
      Apache License 2.0
      •3•3•10•0•Updated Oct 10, 2024Oct 10, 2024

    • SelfControlledCaseSeries

      Public
      An R package for performing Self-Controlled Case Series (SCCS) analyses in an observational database in the OMOP Common Data Model.
      hades
      R
      •8•13•10•0•Updated Oct 10, 2024Oct 10, 2024

    • GIS

      Public
      R
      •
      Apache License 2.0
      •9•9•141•2•Updated Oct 10, 2024Oct 10, 2024

    • SqlRender

      Public
      This is an R package and Java library for rendering parameterized SQL, and translating it to different SQL dialects.
      hades
      R
      •
      Other
      •77•81•8•1•Updated Oct 9, 2024Oct 9, 2024

    • Strategus

      Public
      [Under development] An R packages for coordinating and executing analytics using HADES modules
      R
      •11•7•16•3•Updated Oct 8, 2024Oct 8, 2024

    • CohortPathways

      Public
      0•0•0•0•Updated Oct 8, 2024Oct 8, 2024

    • WhiteRabbit

      Public
      WhiteRabbit is a small application that can be used to analyse the structure and contents of a database as preparation for designing an ETL. It comes with RabbitInAHat, an application for interactive design of an ETL to the OMOP Common Data Model with the help of the the scan report generated by White Rabbit.
      Java
      •
      Apache License 2.0
      •90•181•106•3•Updated Oct 8, 2024Oct 8, 2024

    • Atlas

      Public
      ATLAS is an open source software tool for researchers to conduct scientific analyses on standardized observational data
      JavaScript
      •
      Apache License 2.0
      •136•267•214•16•Updated Oct 8, 2024Oct 8, 2024

    • Athena

      Public
      Web application for distributing and browsing the Standardized Vocabularies for all instances of an OMOP CDM
      Java
      •19•58•53•9•Updated Oct 8, 2024Oct 8, 2024