HiFiCNV v1.0.0

v1.0.0 - 2024-03-27

This release includes minor ease-of-use improvements, CNV output should be unchanged. The release version is updated to 1.0 to reflect that HiFiCNV is now operating as a stable part of our HiFi WGS pipeline.

Added

• Add progress reporter to alignment scan

Changed

• Accelerate depth bin GC content computation
  • Improve and parallelize algorithm to reduce fixed runtime overhead by ~5 min for human genome analysis with typical thread counts.

Fixed

• Improve error message for failed depth estimation (#25)
• Improve error message for unmapped BAM input (#24)
• Improve error message for mismatched reference and BAM chromosomes (#23)
• Improve error message when BAM index is missing (#22)