Merge pull request #18 from PathoGenOmics-Lab/Clean-conda-envs

Clean conda envs
PathoGenOmics-Lab · Sep 15, 2023 · 3e488e1 · 3e488e1
2 parents f189506 + 546da1a
commit 3e488e1
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diff --git a/workflow/envs/biopython.post-deploy.sh b/workflow/envs/biopython.post-deploy.sh
@@ -2,4 +2,4 @@
 
 # Install gb2seq
 
-pip install gb2seq
+pip install gb2seq==0.2.20
diff --git a/workflow/envs/quarto_render.yaml b/workflow/envs/quarto_render.yaml
@@ -2,12 +2,11 @@ channels:
   - conda-forge
   - bioconda
 dependencies:
-  - r-base
+  - r-base==4.3.1
   - r-gt==0.9.0
   - quarto==1.3.450
   - r-jsonlite==1.8.5
-  - r-dplyr==1.1.2
-  - r-tidyr==1.3.0
+  - r-tidyverse==2.0.0
   - r-quarto==1.2
   - r-heatmaply==1.4.2
   - r-readr==2.1.4

diff --git a/workflow/envs/renv.yaml b/workflow/envs/renv.yaml
@@ -5,13 +5,11 @@ dependencies:
   - r-base=4.1.3
   - r-tidyverse==2.0.0
   - r-ggrepel==0.9.3
-  - r-quarto==1.2
   - r-stringi==1.7.12
   - r-ggpubr==0.6.0
   - bioconductor-ggtree==3.2.0
   - r-ape==5.7
   - r-adephylo==1.1_13
-  - r-ggrepel==0.9.3
   - r-pegas==1.2
   - r-data.table==1.14.8
   - r-future.apply==1.11.0
Original file line number	Diff line number	Diff line change
Expand Up		@@ -2,4 +2,4 @@

		# Install gb2seq

		pip install gb2seq
		pip install gb2seq==0.2.20