Fix base path for GitHub actions

PathoGenOmics-Lab · Oct 24, 2023 · 51a6b28 · 51a6b28
1 parent 216457c
commit 51a6b28
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/workflow/Snakefile b/workflow/Snakefile
@@ -11,7 +11,7 @@ configfile: "config/targets.yaml"
 
 include: "rules/common.smk"
 
-BASE_PATH = Path(".").resolve()
+BASE_PATH = Path(workflow.basedir).parent.resolve()
 
 # Workflow version
 __version__ = "1.0.0"