Use ENA run accessions by default

PathoGenOmics-Lab · Oct 18, 2023 · 52240de · 52240de
1 parent 398dea3
commit 52240de
Showing 1 changed file with 36 additions and 36 deletions.
diff --git a/config/targets.yaml b/config/targets.yaml
@@ -1,40 +1,40 @@
 SAMPLES:
-  COV012623:
-    bam: "data/bam/COV012623.trim.sort.bam"
-    fasta: "data/fasta/COV012623.fa"
-  COV012630:
-    bam: "data/bam/COV012630.trim.sort.bam"
-    fasta: "data/fasta/COV012630.fa"
-  COV012635:
-    bam: "data/bam/COV012635.trim.sort.bam"
-    fasta: "data/fasta/COV012635.fa"
-  COV012638:
-    bam: "data/bam/COV012638.trim.sort.bam"
-    fasta: "data/fasta/COV012638.fa"
-  COV012640:
-    bam: "data/bam/COV012640.trim.sort.bam"
-    fasta: "data/fasta/COV012640.fa"
-  COV012651:
-    bam: "data/bam/COV012651.trim.sort.bam"
-    fasta: "data/fasta/COV012651.fa"
-  COV012661:
-    bam: "data/bam/COV012661.trim.sort.bam"
-    fasta: "data/fasta/COV012661.fa"
-  COV012663:
-    bam: "data/bam/COV012663.trim.sort.bam"
-    fasta: "data/fasta/COV012663.fa"
-  COV012672:
-    bam: "data/bam/COV012672.trim.sort.bam"
-    fasta: "data/fasta/COV012672.fa"
-  COV012674:
-    bam: "data/bam/COV012674.trim.sort.bam"
-    fasta: "data/fasta/COV012674.fa"
-  COV012684:
-    bam: "data/bam/COV012684.trim.sort.bam"
-    fasta: "data/fasta/COV012684.fa"
-  COV012716:
-    bam: "data/bam/COV012716.trim.sort.bam"
-    fasta: "data/fasta/COV012716.fa"
+  ERR5708628:
+    bam: "data/bam/ERR5708628.trim.sort.bam"
+    fasta: "data/fasta/ERR5708628.fa"
+  ERR5708640:
+    bam: "data/bam/ERR5708640.trim.sort.bam"
+    fasta: "data/fasta/ERR5708640.fa"
+  ERR5708657:
+    bam: "data/bam/ERR5708657.trim.sort.bam"
+    fasta: "data/fasta/ERR5708657.fa"
+  ERR5709045:
+    bam: "data/bam/ERR5709045.trim.sort.bam"
+    fasta: "data/fasta/ERR5709045.fa"
+  ERR5709055:
+    bam: "data/bam/ERR5709055.trim.sort.bam"
+    fasta: "data/fasta/ERR5709055.fa"
+  ERR5709318:
+    bam: "data/bam/ERR5709318.trim.sort.bam"
+    fasta: "data/fasta/ERR5709318.fa"
+  ERR5709345:
+    bam: "data/bam/ERR5709345.trim.sort.bam"
+    fasta: "data/fasta/ERR5709345.fa"
+  ERR5709354:
+    bam: "data/bam/ERR5709354.trim.sort.bam"
+    fasta: "data/fasta/ERR5709354.fa"
+  ERR5709379:
+    bam: "data/bam/ERR5709379.trim.sort.bam"
+    fasta: "data/fasta/ERR5709379.fa"
+  ERR5709385:
+    bam: "data/bam/ERR5709385.trim.sort.bam"
+    fasta: "data/fasta/ERR5709385.fa"
+  ERR5709420:
+    bam: "data/bam/ERR5709420.trim.sort.bam"
+    fasta: "data/fasta/ERR5709420.fa"
+  ERR5709463:
+    bam: "data/bam/ERR5709463.trim.sort.bam"
+    fasta: "data/fasta/ERR5709463.fa"
 METADATA:
   "data/metadata.csv"
 OUTPUT_DIRECTORY: