avoid errors with step different than 1

PathoGenOmics-Lab · Oct 2, 2023 · 98eee45 · 98eee45
1 parent 8caa739
commit 98eee45
Showing 1 changed file with 2 additions and 1 deletion.
diff --git a/workflow/scripts/report/NV_description.R b/workflow/scripts/report/NV_description.R
@@ -309,7 +309,7 @@ window_plot_spike <- window %>%
 variants_spike <- vcf %>%
   filter(
     ALT_FREQ > 0,
-      POS %in% spike.pos
+      POS %in% c(min(spike.pos):max(spike.pos))
       ) %>%
   ggplot() +
   aes(
@@ -336,6 +336,7 @@ variants_spike <- vcf %>%
       )
 
 
+
 figura_spike <- ggarrange(
   window_plot_spike,
   variants_spike,