Use log warning to show empty VCF

PathoGenOmics-Lab · Apr 16, 2024 · c4f546e · c4f546e
1 parent 42f76ec
commit c4f546e
Showing 1 changed file with 2 additions and 2 deletions.
diff --git a/workflow/scripts/report/NV_description.R b/workflow/scripts/report/NV_description.R
@@ -316,9 +316,9 @@ window_plot_spike <- window %>%
 
 if (nrow(vcf_spike) == 0) {
   log_warn("Spike VCF has no rows")
-  print(vcf_spike)
+  log_warn(vcf_spike$REGION)
   vcf_spike <- empty_vcf
-  print(vcf_spike)
+  log_warn(vcf_spike$NV_class)
 }
 
 variants_spike <- vcf_spike %>%