Add a script and a systemd unit for starting the webviewer

PavlidisLab · Jan 22, 2024 · 5cd89b4 · 5cd89b4
1 parent 41dee41
commit 5cd89b4
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diff --git a/data/rnaseq-pipeline-viewer.service b/data/rnaseq-pipeline-viewer.service
@@ -0,0 +1,12 @@
+[Unit]
+Description=PavLab RNA-Seq Pipeline Viewer
+After=multi-user.target
+
+[Service]
+Type=simple
+WorkingDirectory=/space/grp/Pipelines/rnaseq-pipeline
+ExecStart=/space/grp/Pipelines/rnaseq-pipeline/scripts/webviewer
+User=poirigui
+
+[Install]
+WantedBy=multi-user.target
diff --git a/scripts/webviewer b/scripts/webviewer
@@ -0,0 +1,4 @@
+#!/bin/fish
+
+conda activate rnaseq-pipeline
+exec gunicorn -e SCRIPT_NAME=/rnaseq-pipeline -b 0.0.0.0:8000 rnaseq_pipeline.webviewer:app --access-logfile pipeline-output/webviewer-logs/access.log --error-logfile pipeline-output/webviewer-logs/error.log