Add a 2 hours walltime limit for prefetch tasks

PavlidisLab · Jul 12, 2024 · 7ba68a1 · 7ba68a1
1 parent 1a660ed
commit 7ba68a1
Showing 1 changed file with 2 additions and 1 deletion.
diff --git a/rnaseq_pipeline/sources/sra.py b/rnaseq_pipeline/sources/sra.py
@@ -62,7 +62,8 @@ def run(self):
                                   self.output().path,
                                   max_size=65,
                                   scheduler_partition='Wormhole',
-                                  metadata=self.metadata)
+                                  metadata=self.metadata,
+                                  walltime=timedelta(hours=2))
 
     def output(self):
         return luigi.LocalTarget(join(self._get_ncbi_public_dir(), 'sra', f'{self.srr}.sra'))