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@PistilliLab

The Pistilli Lab

Software developed by the Pistilli lab.

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  1. ColonyTrace ColonyTrace Public

    A comprehensive software suite for tracking the full lifespan of research mice.

    Python 1

  2. CLAMSwrangler CLAMSwrangler Public

    Python program for cleaning, trimming, binning, and reformatting of data generated by the Columbus Instruments CLAMS for downstream statistical analysis.

    Python

  3. RNAseq-pipeline RNAseq-pipeline Public

    Pipeline for processing bulk RNA-seq data from raw .fastq files to read counts.

    Shell

  4. PHYSwrangler PHYSwrangler Public

    Code to process data generated by Aurora Scientific muscle physiology system.

    Python

  5. miRNAseq-Pipeline miRNAseq-Pipeline Public

    Scripts for processing miRNA sequencing data using the miRDeep2 package

    Shell

  6. SequenceExtract SequenceExtract Public

    Extracts genomic sequences surrounding gene loci supplied in a text file containing Entrez IDs.

    Python

Repositories

Showing 8 of 8 repositories
  • RNAseq-pipeline Public

    Pipeline for processing bulk RNA-seq data from raw .fastq files to read counts.

    PistilliLab/RNAseq-pipeline’s past year of commit activity
    Shell 0 GPL-3.0 0 1 0 Updated Sep 18, 2024
  • CLAMSwrangler-web Public

    Web version of CLAMS Wrangler. Built using Django and bootstrap.

    PistilliLab/CLAMSwrangler-web’s past year of commit activity
    Python 0 GPL-3.0 0 2 0 Updated Sep 16, 2024
  • ColonyTrace Public

    A comprehensive software suite for tracking the full lifespan of research mice.

    PistilliLab/ColonyTrace’s past year of commit activity
    Python 1 GPL-3.0 0 0 0 Updated Apr 29, 2024
  • CLAMSwrangler Public

    Python program for cleaning, trimming, binning, and reformatting of data generated by the Columbus Instruments CLAMS for downstream statistical analysis.

    PistilliLab/CLAMSwrangler’s past year of commit activity
    Python 0 GPL-3.0 0 1 0 Updated Apr 4, 2024
  • misc Public

    Miscellaneous scripts not directly associated with any other repos here.

    PistilliLab/misc’s past year of commit activity
    Python 0 GPL-3.0 0 0 0 Updated Feb 8, 2024
  • SequenceExtract Public

    Extracts genomic sequences surrounding gene loci supplied in a text file containing Entrez IDs.

    PistilliLab/SequenceExtract’s past year of commit activity
    Python 0 GPL-3.0 0 0 0 Updated Dec 1, 2023
  • miRNAseq-Pipeline Public

    Scripts for processing miRNA sequencing data using the miRDeep2 package

    PistilliLab/miRNAseq-Pipeline’s past year of commit activity
    Shell 0 GPL-3.0 0 0 0 Updated Nov 1, 2023
  • PHYSwrangler Public

    Code to process data generated by Aurora Scientific muscle physiology system.

    PistilliLab/PHYSwrangler’s past year of commit activity
    Python 0 GPL-3.0 0 0 0 Updated Oct 2, 2023

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