The Pistilli Lab
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ColonyTrace
ColonyTrace PublicA comprehensive software suite for tracking the full lifespan of research mice.
Python 1
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CLAMSwrangler
CLAMSwrangler PublicPython program for cleaning, trimming, binning, and reformatting of data generated by the Columbus Instruments CLAMS for downstream statistical analysis.
Python
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RNAseq-pipeline
RNAseq-pipeline PublicPipeline for processing bulk RNA-seq data from raw .fastq files to read counts.
Shell
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PHYSwrangler
PHYSwrangler PublicCode to process data generated by Aurora Scientific muscle physiology system.
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miRNAseq-Pipeline
miRNAseq-Pipeline PublicScripts for processing miRNA sequencing data using the miRDeep2 package
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SequenceExtract
SequenceExtract PublicExtracts genomic sequences surrounding gene loci supplied in a text file containing Entrez IDs.
Python
Repositories
- RNAseq-pipeline Public
Pipeline for processing bulk RNA-seq data from raw .fastq files to read counts.
PistilliLab/RNAseq-pipeline’s past year of commit activity - CLAMSwrangler Public
Python program for cleaning, trimming, binning, and reformatting of data generated by the Columbus Instruments CLAMS for downstream statistical analysis.
PistilliLab/CLAMSwrangler’s past year of commit activity - SequenceExtract Public
Extracts genomic sequences surrounding gene loci supplied in a text file containing Entrez IDs.
PistilliLab/SequenceExtract’s past year of commit activity