Repositories list

• RNAseq-pipeline

  Public
  Pipeline for processing bulk RNA-seq data from raw .fastq files to read counts.

  bioinformaticsrna-seq-pipeline

  Shell

  •

  GNU General Public License v3.0

  •0•0•1•0•Updated Sep 18, 2024Sep 18, 2024

• CLAMSwrangler-web

  Public
  Web version of CLAMS Wrangler. Built using Django and bootstrap.

  metabolismbiomedical-sciencesoxymax-clams

  Python

  •

  GNU General Public License v3.0

  •0•0•2•0•Updated Sep 16, 2024Sep 16, 2024

• ColonyTrace

  Public
  A comprehensive software suite for tracking the full lifespan of research mice.

  micebiomedicalanimal-research

  Python

  •

  GNU General Public License v3.0

  •0•1•0•0•Updated Apr 29, 2024Apr 29, 2024

• CLAMSwrangler

  Public
  Python program for cleaning, trimming, binning, and reformatting of data generated by the Columbus Instruments CLAMS for downstream statistical analysis.

  metabolismbiomedical-sciencesoxymax-clams

  Python

  •

  GNU General Public License v3.0

  •0•0•1•0•Updated Apr 4, 2024Apr 4, 2024

• misc

  Public
  Miscellaneous scripts not directly associated with any other repos here.

  Python

  •

  GNU General Public License v3.0

  •0•0•0•0•Updated Feb 8, 2024Feb 8, 2024

• SequenceExtract

  Public
  Extracts genomic sequences surrounding gene loci supplied in a text file containing Entrez IDs.

  Python

  •

  GNU General Public License v3.0

  •0•0•0•0•Updated Dec 1, 2023Dec 1, 2023

• miRNAseq-Pipeline

  Public
  Scripts for processing miRNA sequencing data using the miRDeep2 package

  Shell

  •

  GNU General Public License v3.0

  •0•0•0•0•Updated Nov 1, 2023Nov 1, 2023

• PHYSwrangler

  Public
  Code to process data generated by Aurora Scientific muscle physiology system.

  Python

  •

  GNU General Public License v3.0

  •0•0•0•0•Updated Oct 2, 2023Oct 2, 2023