Create code_dev_3.txt

docs/chatbot_comparison/code_dev_3.txt

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+Create a simple Snakefile for a bioinformatics workflow using Snakemake and conda, including:
+
+- Trimmomatic: Trim and clean raw sequencing data.
+- FastQC: Perform quality control on trimmed data.
+
+Requirements:
+
+- Trimmomatic Rules: Process all input files in the raw_data directory.
+- FastQC Rules: Run only on trimmed data.
+
+Conda Configuration:
+- Include conda configurations for each tool.
+- Use a single environment.yml file for the entire workflow.
+- Snakemake 8.25.5 is already installed. Do not include this in the yml file
+
+Input Data:
+- Unzipped FASTQ files in {input_directory}/data.
+
+Deliverables:
+- Snakefile with specified rules and configurations.
+- environment.yml file with dependencies.