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Add citation.cff #159

Merged
merged 5 commits into from
Jun 27, 2024
Merged

Add citation.cff #159

merged 5 commits into from
Jun 27, 2024

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paulflang
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@paulflang paulflang commented Jun 26, 2024

Adds citation information to readme. Updates tests so that they pass despite warnings.

@@ -21,7 +21,7 @@ SBML = "1.4.4"
SBMLToolkitTestSuite = "0.0.3"
SafeTestsets = "0.1"
Sundials = "4.14"
SymbolicUtils = "2"
SymbolicUtils = "1, 2"
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why would we add back 1?

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I thought the less restrictive we are with our compats, the less likely developers who may depend on SBMLtk have compatibility issues. Also because of a compatibility requirement with the latest Catalyst release. Looks like the next release will no longer have a SymbolicUtils requirement, tho.

src/reactions.jl Outdated
@@ -163,7 +163,7 @@ Get rate constant of mass action kineticLaws
function get_massaction(kl::Num, reactants::Union{Vector{Num}, Nothing},
stoich::Union{Vector{<:Real}, Nothing})
function check_args(x::SymbolicUtils.BasicSymbolic{Real})
check_args(Val(SymbolicUtils.istree(x)), x)
check_args(Val(SymbolicUtils.TermInterface.iscall(x)), x)
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Also, do you know why this does not fix this, but instead causes failure in Downgrade.yaml? And why does Downgrade julia-actions/julia-runtest@v1, if it is already present in CI.yaml?

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There might be more in ModelingToolkit to handle.

@paulflang paulflang marked this pull request as ready for review June 27, 2024 16:55
@paulflang paulflang merged commit 0a74b5d into main Jun 27, 2024
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2 participants