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@ShujiaHuang ShujiaHuang released this 11 Sep 03:54
v1.0.0
4761d29

Release the first C++ version of BaseVar

This is the first official version of BaseVar that has been fully implemented by C++. This version delivers a computing speed exceeding 20 times that of the Python version, all while demanding substantially less memory.

  • Use C++ to improve the performance of BaseVar;
  • Rewrite the whole codes and functions;
  • Use htslib to deal with BAM/VCF/CVG files
  • Make buffer for samples's BAM in specific genome regions, this could improve the performance;
  • Fix some bugs.
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