2nd Meeting Notes, Nov 30th

• The transcripts have been preliminarily mapped to Ensembl reference genes (by Muhammad and Dimitri).
• The gene lengths (exonic) are added to calculate TPM. If TPM < 1, the genes are not differentially expressed (ref to be attached by Muhammad).
• The first filter should be based on the protein-coding genes in HPA db. Then do differential expression analysis.
• Sequencing platform: Illumina HiSeq

To-Do List (by the end of this week):
Combine metadata and raw counts.
Look up whether to sum up or take median/mean for the samples that were sequenced multiple times (deeper coverage).
The transcripts have been preliminarily mapped to Ensembl reference genes.
Upload reference regarding TPM value cut-off.