applicativesystem
released this
07 Oct 12:13
·
4 commits
to main
since this release
gauavsablok@gauravsablok ~/Desktop/codecreatede/golang/go-diamond-tags ±main⚡ » \
./godiamondtags
Analyzer for the diamond aligner and pacbio reads for hints
Usage:
analyze [command]
Available Commands:
alignment
completion Generate the autocompletion script for the specified shell
help Help about any command
Flags:
-h, --help help for analyze
Use "analyze [command] --help" for more information about a command.
gauavsablok@gauravsablok ~/Desktop/codecreatede/golang/go-diamond-tags ±main⚡ » \
./godiamondtags alignment -h
Analyzes the hsp from the diamond read to protein alignment
Usage:
analyze alignment [flags]
Flags:
-a, --alignmentfile string alignment (default "alignment file to be analyzed")
-h, --help help for alignment
-p, --pacbioreads string pacbio file (default "pacbio reads file")
gauavsablok@gauravsablok ~/Desktop/codecreatede/golang/go-diamond-tags ±main⚡ » \
./godiamondtags alignment -a matches.tsv -p ./samplefiles/pacbioreads.fasta
chr10:66478458-66505490 1.0061776347427218
chr10:66478458-66505490 0.9026005252839123
chr11:66478458-66505490 0.8952021603225687
chr11:66478458-66505490 1.0875596493175008
gauavsablok@gauravsablok ~/Desktop/codecreatede/golang/go-diamond-tags ±main⚡ » \
cat coveragestimation.txt
chr10:66478458-66505490 1.0061776347427218
chr10:66478458-66505490 0.9026005252839123
chr11:66478458-66505490 0.8952021603225687
chr11:66478458-66505490 1.0875596493175008