Skip to content

applicativesystem/pangenome-single-copy-gene

Folders and files

NameName
Last commit message
Last commit date

Latest commit

 

History

2 Commits
 
 
 
 
 
 

Repository files navigation

pangenome-single-copy-gene

  • a single copy gene analysis pangenome which allows for the orthology already computed and allows for the alignment and phylogeny building using three alignment approaches and also allows for the GTRCAT and GTRGAMA model with 1000 bootstrap.
  • To check the file conversion it iterates the first files at the start and see if the number matches to the number of the genes present in each files. If the number doesnt matches then it will exit such as

Updated 2024-2-17 added the support for all options and selected options and also added support for the multi-tool phylogeny.

Gaurav Sablok
University of Potsdam,
Potsdam,Germany