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solved some docs build problems
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Seher Karakuzu authored and Seher Karakuzu committed Apr 9, 2024
1 parent bfa73ed commit a9f4320
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Showing 14 changed files with 71 additions and 71 deletions.
6 changes: 3 additions & 3 deletions tiled/adapters/array.py
Original file line number Diff line number Diff line change
@@ -1,4 +1,4 @@
from typing import Any, Optional, Tuple, Union
from typing import Any, List, Optional, Tuple, Union

import dask.array
from numpy import dtype, ndarray
Expand Down Expand Up @@ -33,7 +33,7 @@ def __init__(
structure: ArrayStructure,
*,
metadata: Optional[JSON] = None,
specs: Optional[list[Spec]] = None,
specs: Optional[List[Spec]] = None,
access_policy: Optional[Union[SimpleAccessPolicy, DummyAccessPolicy]] = None,
) -> None:
"""
Expand All @@ -60,7 +60,7 @@ def from_array(
chunks: Optional[Tuple[Tuple[int, ...], ...]] = None,
dims: Optional[Tuple[str, ...]] = None,
metadata: Optional[JSON] = None,
specs: Optional[list[Spec]] = None,
specs: Optional[List[Spec]] = None,
access_policy: Optional[Union[SimpleAccessPolicy, DummyAccessPolicy]] = None,
) -> "ArrayAdapter":
"""
Expand Down
10 changes: 5 additions & 5 deletions tiled/adapters/awkward.py
Original file line number Diff line number Diff line change
@@ -1,4 +1,4 @@
from typing import Any, Optional, Union
from typing import Any, Dict, List, Optional, Union

import awkward
import awkward.forms
Expand All @@ -19,7 +19,7 @@ def __init__(
container: DirectoryContainer,
structure: AwkwardStructure,
metadata: Optional[JSON] = None,
specs: Optional[list[Spec]] = None,
specs: Optional[List[Spec]] = None,
access_policy: Optional[Union[DummyAccessPolicy, SimpleAccessPolicy]] = None,
) -> None:
"""
Expand All @@ -43,7 +43,7 @@ def from_array(
cls,
array: NDArray[Any],
metadata: Optional[JSON] = None,
specs: Optional[list[Spec]] = None,
specs: Optional[List[Spec]] = None,
access_policy: Optional[Union[DummyAccessPolicy, SimpleAccessPolicy]] = None,
) -> "AwkwardAdapter":
"""
Expand Down Expand Up @@ -78,7 +78,7 @@ def metadata(self) -> JSON:
"""
return self._metadata

def read_buffers(self, form_keys: Optional[list[str]] = None) -> dict[str, Any]:
def read_buffers(self, form_keys: Optional[List[str]] = None) -> Dict[str, Any]:
"""
Parameters
Expand All @@ -101,7 +101,7 @@ def read_buffers(self, form_keys: Optional[list[str]] = None) -> dict[str, Any]:
buffers[key] = self.container[key]
return buffers

def read(self) -> dict[str, Any]:
def read(self) -> Dict[str, Any]:
"""
Returns
Expand Down
2 changes: 1 addition & 1 deletion tiled/adapters/awkward_buffers.py
Original file line number Diff line number Diff line change
Expand Up @@ -121,7 +121,7 @@ def from_directory(
data_uri: str,
structure: AwkwardStructure,
metadata: Optional[JSON] = None,
specs: Optional[list[Spec]] = None,
specs: Optional[List[Spec]] = None,
access_policy: Optional[Union[DummyAccessPolicy, SimpleAccessPolicy]] = None,
) -> "AwkwardBuffersAdapter":
"""
Expand Down
14 changes: 7 additions & 7 deletions tiled/adapters/csv.py
Original file line number Diff line number Diff line change
@@ -1,5 +1,5 @@
from pathlib import Path
from typing import Any, Callable, Iterator, List, Optional, Tuple, Union
from typing import Any, Callable, Dict, Iterator, List, Optional, Tuple, Union

import dask.dataframe
import pandas
Expand Down Expand Up @@ -28,7 +28,7 @@ def read_csv(
data_uri: str,
structure: Optional[TableStructure] = None,
metadata: Optional[JSON] = None,
specs: Optional[list[Spec]] = None,
specs: Optional[List[Spec]] = None,
access_policy: Optional[Union[DummyAccessPolicy, SimpleAccessPolicy]] = None,
**kwargs: Any,
) -> TableAdapter:
Expand Down Expand Up @@ -81,10 +81,10 @@ class CSVAdapter:

def __init__(
self,
data_uris: Union[str, list[str]],
data_uris: Union[str, List[str]],
structure: Optional[TableStructure] = None,
metadata: Optional[JSON] = None,
specs: Optional[list[Spec]] = None,
specs: Optional[List[Spec]] = None,
access_policy: Optional[Union[DummyAccessPolicy, SimpleAccessPolicy]] = None,
) -> None:
"""
Expand Down Expand Up @@ -211,7 +211,7 @@ def write(self, data: Union[dask.dataframe.DataFrame, pandas.DataFrame]) -> None
uri = self._partition_paths[0]
data.to_csv(uri, index=False)

def read(self, *args: Optional[list[str]], **kwargs: Any) -> pandas.DataFrame:
def read(self, *args: Optional[List[str]], **kwargs: Any) -> pandas.DataFrame:
"""
Parameters
Expand Down Expand Up @@ -266,7 +266,7 @@ def get(self, key: str) -> Union[ArrayAdapter, None]:
def generate_data_sources(
self,
mimetype: Any,
dict_or_none: Callable[[TableStructure], dict[str, str]],
dict_or_none: Callable[[TableStructure], Dict[str, str]],
item: Union[str, Path],
is_directory: bool,
) -> List[DataSource]:
Expand Down Expand Up @@ -307,7 +307,7 @@ def from_single_file(
data_uri: str,
structure: Optional[TableStructure] = None,
metadata: Optional[JSON] = None,
specs: Optional[list[Spec]] = None,
specs: Optional[List[Spec]] = None,
access_policy: Optional[Union[DummyAccessPolicy, SimpleAccessPolicy]] = None,
) -> "CSVAdapter":
"""
Expand Down
18 changes: 9 additions & 9 deletions tiled/adapters/hdf5.py
Original file line number Diff line number Diff line change
Expand Up @@ -2,7 +2,7 @@
import os
import warnings
from pathlib import Path
from typing import Any, Iterator, Optional, Union
from typing import Any, Iterator, List, Optional, Tuple, Union

import h5py
import numpy
Expand Down Expand Up @@ -75,7 +75,7 @@ def __init__(
*,
structure: Optional[NodeStructure] = None,
metadata: Optional[JSON] = None,
specs: Optional[list[Spec]] = None,
specs: Optional[List[Spec]] = None,
access_policy: Optional[Union[SimpleAccessPolicy, DummyAccessPolicy]] = None,
) -> None:
"""
Expand Down Expand Up @@ -103,7 +103,7 @@ def from_file(
metadata: Optional[JSON] = None,
swmr: bool = SWMR_DEFAULT,
libver: str = "latest",
specs: Optional[list[Spec]] = None,
specs: Optional[List[Spec]] = None,
access_policy: Optional[Union[SimpleAccessPolicy, DummyAccessPolicy]] = None,
) -> "HDF5Adapter":
"""
Expand All @@ -127,7 +127,7 @@ def from_file(
@classmethod
def from_uri(
cls,
data_uri: Union[str, list[str]],
data_uri: Union[str, List[str]],
*,
structure: Optional[NodeStructure] = None,
metadata: Optional[JSON] = None,
Expand Down Expand Up @@ -314,7 +314,7 @@ def read(self, fields: Optional[str] = None) -> "HDF5Adapter":

# The following two methods are used by keys(), values(), items().

def _keys_slice(self, start: int, stop: int, direction: int) -> list[Any]:
def _keys_slice(self, start: int, stop: int, direction: int) -> List[Any]:
"""
Parameters
Expand All @@ -334,7 +334,7 @@ def _keys_slice(self, start: int, stop: int, direction: int) -> list[Any]:

def _items_slice(
self, start: int, stop: int, direction: int
) -> list[tuple[Any, Any]]:
) -> List[Tuple[Any, Any]]:
"""
Parameters
Expand Down Expand Up @@ -367,15 +367,15 @@ def inlined_contents_enabled(self, depth: int) -> bool:


def hdf5_lookup(
data_uri: Union[str, list[str]],
data_uri: Union[str, List[str]],
*,
structure: Optional[NodeStructure] = None,
metadata: Optional[JSON] = None,
swmr: bool = SWMR_DEFAULT,
libver: str = "latest",
specs: Optional[list[Spec]] = None,
specs: Optional[List[Spec]] = None,
access_policy: Optional[Union[SimpleAccessPolicy, DummyAccessPolicy]] = None,
path: Optional[Union[list[Path], list[str]]] = None,
path: Optional[Union[List[Path], List[str]]] = None,
) -> Union[HDF5Adapter, ArrayAdapter]:
"""
Expand Down
18 changes: 9 additions & 9 deletions tiled/adapters/mapping.py
Original file line number Diff line number Diff line change
Expand Up @@ -4,7 +4,7 @@
import operator
from collections import Counter
from datetime import datetime, timedelta
from typing import Any, Iterator, List, Optional, Tuple, Union, cast
from typing import Any, Dict, Iterator, List, Optional, Tuple, Union, cast

from fastapi import APIRouter

Expand Down Expand Up @@ -64,7 +64,7 @@ def __init__(
structure: Optional[NodeStructure] = None,
metadata: Optional[JSON] = None,
sorting: Optional[List[SortingItem]] = None,
specs: Optional[list[Spec]] = None,
specs: Optional[List[Spec]] = None,
access_policy: Optional[Union[SimpleAccessPolicy, DummyAccessPolicy]] = None,
entries_stale_after: Optional[timedelta] = None,
metadata_stale_after: Optional[timedelta] = None,
Expand Down Expand Up @@ -99,7 +99,7 @@ def __init__(
# This is a special case that means, "the given ordering".
# By giving that a name ("_") we enable requests to asking for the
# last N by requesting the sorting ("_", -1).
sorting = [SortingItem("_", 1)]
sorting = [SortingItem(key="_", direction=1)]
self._sorting = sorting
self._metadata = metadata or {}
self.specs = specs or []
Expand Down Expand Up @@ -170,7 +170,7 @@ def metadata(self) -> JSON:
return self._metadata

@property
def sorting(self) -> list[SortingItem]:
def sorting(self) -> List[SortingItem]:
"""
Returns
Expand Down Expand Up @@ -284,9 +284,9 @@ def entries_stale_at(self) -> Optional[datetime]:
def new_variation(
self,
*args: Any,
mapping: Union[Sentinel, dict[str, Any]] = UNCHANGED,
mapping: Union[Sentinel, Dict[str, Any]] = UNCHANGED,
metadata: Union[Sentinel, JSON] = UNCHANGED,
sorting: Union[Sentinel, list[SortingItem]] = UNCHANGED,
sorting: Union[Sentinel, List[SortingItem]] = UNCHANGED,
must_revalidate: Union[Sentinel, bool] = UNCHANGED,
**kwargs: Any,
) -> "MapAdapter":
Expand Down Expand Up @@ -361,7 +361,7 @@ def get_distinct(
self,
metadata: JSON,
structure_families: StructureFamily,
specs: list[Spec],
specs: List[Spec],
counts: int,
) -> dict[str, Any]:
"""
Expand Down Expand Up @@ -436,7 +436,7 @@ def sort(self, sorting: SortingItem) -> "MapAdapter":

def _keys_slice(
self, start: int, stop: int, direction: int
) -> Union[Iterator[str], list[str]]:
) -> Union[Iterator[str], List[str]]:
"""
Parameters
Expand Down Expand Up @@ -523,7 +523,7 @@ def walk_string_values(tree: MapAdapter, node: Optional[Any] = None) -> Iterator
yield item


def counter_to_dict(counter: dict[str, Any], counts: Any) -> list[dict[str, Any]]:
def counter_to_dict(counter: Dict[str, Any], counts: Any) -> List[Dict[str, Any]]:
"""
Parameters
Expand Down
4 changes: 2 additions & 2 deletions tiled/adapters/netcdf.py
Original file line number Diff line number Diff line change
@@ -1,12 +1,12 @@
from pathlib import Path
from typing import Union
from typing import List, Union

import xarray

from .xarray import DatasetAdapter


def read_netcdf(filepath: Union[str, list[str], Path]) -> DatasetAdapter:
def read_netcdf(filepath: Union[str, List[str], Path]) -> DatasetAdapter:
"""
Parameters
Expand Down
2 changes: 1 addition & 1 deletion tiled/adapters/parquet.py
Original file line number Diff line number Diff line change
Expand Up @@ -70,7 +70,7 @@ def dataframe_adapter(self) -> DataFrameAdapter:

@classmethod
def init_storage(
cls, data_uri: Union[str, list[str]], structure: TableStructure
cls, data_uri: Union[str, List[str]], structure: TableStructure
) -> Any:
"""
Expand Down
14 changes: 7 additions & 7 deletions tiled/adapters/sparse.py
Original file line number Diff line number Diff line change
@@ -1,4 +1,4 @@
from typing import Any, Optional, Tuple, Union
from typing import Any, Dict, List, Optional, Tuple, Union

import dask
import numpy
Expand All @@ -25,7 +25,7 @@ def from_arrays(
shape: Tuple[int, ...],
dims: Optional[Tuple[str, ...]] = None,
metadata: Optional[JSON] = None,
specs: Optional[list[Spec]] = None,
specs: Optional[List[Spec]] = None,
access_policy: Optional[Union[SimpleAccessPolicy, DummyAccessPolicy]] = None,
) -> "COOAdapter":
"""
Expand Down Expand Up @@ -66,7 +66,7 @@ def from_coo(
*,
dims: Optional[Tuple[str, ...]] = None,
metadata: Optional[JSON] = None,
specs: Optional[list[Spec]] = None,
specs: Optional[List[Spec]] = None,
access_policy: Optional[Union[SimpleAccessPolicy, DummyAccessPolicy]] = None,
) -> "COOAdapter":
"""
Expand Down Expand Up @@ -96,13 +96,13 @@ def from_coo(
@classmethod
def from_global_ref(
cls,
blocks: dict[Tuple[int, ...], Tuple[NDArray[Any], Any]],
blocks: Dict[Tuple[int, ...], Tuple[NDArray[Any], Any]],
shape: Tuple[int, ...],
chunks: Tuple[Tuple[int, ...], ...],
*,
dims: Optional[Tuple[str, ...]] = None,
metadata: Optional[JSON] = None,
specs: Optional[list[Spec]] = None,
specs: Optional[List[Spec]] = None,
access_policy: Optional[Union[SimpleAccessPolicy, DummyAccessPolicy]] = None,
) -> "COOAdapter":
"""
Expand Down Expand Up @@ -145,11 +145,11 @@ def from_global_ref(

def __init__(
self,
blocks: dict[Tuple[int, ...], Tuple[NDArray[Any], Any]],
blocks: Dict[Tuple[int, ...], Tuple[NDArray[Any], Any]],
structure: COOStructure,
*,
metadata: Optional[JSON] = None,
specs: Optional[list[Spec]] = None,
specs: Optional[List[Spec]] = None,
access_policy: Optional[Union[SimpleAccessPolicy, DummyAccessPolicy]] = None,
) -> None:
"""
Expand Down
10 changes: 5 additions & 5 deletions tiled/adapters/sparse_blocks_parquet.py
Original file line number Diff line number Diff line change
@@ -1,5 +1,5 @@
import itertools
from typing import Any, Optional, Tuple, Union
from typing import Any, List, Optional, Tuple, Union

import dask.base
import dask.dataframe
Expand All @@ -16,7 +16,7 @@
from .type_alliases import JSON


def load_block(uri: str) -> Tuple[list[int], Tuple[NDArray[Any], Any]]:
def load_block(uri: str) -> Tuple[List[int], Tuple[NDArray[Any], Any]]:
"""
Parameters
Expand All @@ -42,10 +42,10 @@ class SparseBlocksParquetAdapter:

def __init__(
self,
data_uris: Union[str, list[str]],
data_uris: Union[str, List[str]],
structure: COOStructure,
metadata: Optional[JSON] = None,
specs: Optional[list[Spec]] = None,
specs: Optional[List[Spec]] = None,
access_policy: Optional[Union[SimpleAccessPolicy, DummyAccessPolicy]] = None,
) -> None:
"""
Expand All @@ -70,7 +70,7 @@ def __init__(
@classmethod
def init_storage(
cls,
data_uri: Union[str, list[str]],
data_uri: Union[str, List[str]],
structure: COOStructure,
) -> Any:
"""
Expand Down
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