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Releases: bonsai-team/Porechop_ABI

v0.5.0 release

25 Aug 08:53
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First official release of the Ab-Initio version of Porechop.

New features (compared to native Porechop) includes:

  • Automatic adapter sequence inference from read file (--ab_initio / -abi mode)
  • Setting custom adapters from command line (--custom_adapters / -cap + adapter file)
  • Possibility to ignore default database adapters (--discard_database / -dd)

Current work is stable enough to work in production,
but some changes need to be made before the release of the 1.0.0 version.

Here is a non exhaustive list of needed changes:

  • Read loading / unloading optimization
  • Unified file, reads and error handling for Porechop and ab-initio module
  • Fully wrapping the approximated k-mer counter using shared objects
  • Native MS Windows installation through setuptools and conda.
  • More unit tests and integration tests