First official release of the Ab-Initio version of Porechop.
New features (compared to native Porechop) includes:
- Automatic adapter sequence inference from read file (--ab_initio / -abi mode)
- Setting custom adapters from command line (--custom_adapters / -cap + adapter file)
- Possibility to ignore default database adapters (--discard_database / -dd)
Current work is stable enough to work in production,
but some changes need to be made before the release of the 1.0.0 version.
Here is a non exhaustive list of needed changes:
- Read loading / unloading optimization
- Unified file, reads and error handling for Porechop and ab-initio module
- Fully wrapping the approximated k-mer counter using shared objects
- Native MS Windows installation through setuptools and conda.
- More unit tests and integration tests