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@calacademy-research

California Academy of Sciences, Institute for Biodiversity Science & Sustainability

Public repositories for IBSS projects

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  1. minibar minibar Public

    Dual barcode and primer demultiplexing for MinION sequenced reads

    Python 34 5

  2. antcat antcat Public

    World Catalog of Ants

    Ruby 19 8

  3. RAxML_Astral_trees RAxML_Astral_trees Public

    This project generates Astral-III species trees from gene trees generated from RAxML using UCE data generated by the Phyluce pipeline. Then runs an Astral III analysis.

    Shell 8 2

  4. BLATq BLATq Public

    blatq is a modified version of BLAT—The BLAST-Like Alignment Tool to allow direct use of fastq files

    C 4 1

  5. antweb antweb Public

    AntWeb is the world's largest online database of images, specimen records, and natural history information on ants. It is community driven and open to contribution from anyone with specimen records…

    Java 4

  6. COMB COMB Public

    C O M B

    R 4 4

Repositories

Showing 10 of 50 repositories
  • web-asset-importer Public

    Image client used in conjunction with web-asset-server to process images/data into image server, and specify databases.

    calacademy-research/web-asset-importer’s past year of commit activity
    Python 1 0 0 1 Updated Sep 25, 2024
  • picturae_csv_parser Public

    stand alone program with simple UI, used to create csv ready for specify import from picturae supplied data

    calacademy-research/picturae_csv_parser’s past year of commit activity
    Python 1 0 0 0 Updated Sep 24, 2024
  • antweb Public

    AntWeb is the world's largest online database of images, specimen records, and natural history information on ants. It is community driven and open to contribution from anyone with specimen records, natural history comments, or images.

    calacademy-research/antweb’s past year of commit activity
    Java 4 0 0 6 Updated Sep 24, 2024
  • expedition-clustering Public
    calacademy-research/expedition-clustering’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Sep 24, 2024
  • collections_tools Public

    A submodule storing util functions for use in ibss collections image server, data cleaning and data import related tasks

    calacademy-research/collections_tools’s past year of commit activity
    0 0 0 0 Updated Sep 24, 2024
  • PythonLife Public
    calacademy-research/PythonLife’s past year of commit activity
    Jupyter Notebook 2 0 0 0 Updated Sep 18, 2024
  • COMB Public

    C O M B

    calacademy-research/COMB’s past year of commit activity
    R 4 Apache-2.0 4 18 1 Updated Sep 15, 2024
  • cas-web-asset-server Public Forked from specify/web-asset-server

    Sample attachment server implementation for Specify.

    calacademy-research/cas-web-asset-server’s past year of commit activity
    Python 2 13 0 0 Updated Sep 13, 2024
  • metadata_tools Public

    utility package for writing and reading image metadata

    calacademy-research/metadata_tools’s past year of commit activity
    Python 0 0 0 0 Updated Sep 13, 2024
  • antcat Public

    World Catalog of Ants

    calacademy-research/antcat’s past year of commit activity
    Ruby 19 8 0 3 Updated Aug 27, 2024
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