Repositories list

• picturae_csv_parser

  Public
  stand alone program , used to QC csvs ready for specify import from picturae, nfn and digileap supplied data

  Python

  •0•1•0•0•Updated Feb 21, 2025Feb 21, 2025

• COMB

  Public
  C O M B

  R

  •

  Apache License 2.0

  •4•4•18•1•Updated Feb 18, 2025Feb 18, 2025

• cas-web-asset-server

  Public
  Sample attachment server implementation for Specify.

  Python

  •15•2•0•0•Updated Feb 18, 2025Feb 18, 2025

• web-asset-importer

  Public
  Image client used in conjunction with web-asset-server to process images/data into image server, and specify databases.

  Python

  •0•1•0•0•Updated Feb 15, 2025Feb 15, 2025

• antweb

  Public
  AntWeb is the world's largest online database of images, specimen records, and natural history information on ants. It is community driven and open to contribution from anyone with specimen records, natural history comments, or images.

  Java

  •1•4•0•7•Updated Feb 14, 2025Feb 14, 2025

• expedition-clustering

  Public
  Jupyter Notebook

  •0•0•0•1•Updated Feb 12, 2025Feb 12, 2025

• antcat

  Public
  World Catalog of Ants

  Ruby

  •9•19•0•4•Updated Jan 24, 2025Jan 24, 2025

• assembly_etc

  Public
  Shell

  •

  MIT License

  •0•1•0•0•Updated Jan 7, 2025Jan 7, 2025

• load_analyzer

  Public
  Python

  •

  GNU General Public License v3.0

  •1•1•0•0•Updated Dec 13, 2024Dec 13, 2024

• webportal-installer-FLMNH

  Public
  The Specify Web Portal

  JavaScript

  •

  GNU General Public License v2.0

  •11•0•0•0•Updated Dec 12, 2024Dec 12, 2024

• metadata_tools

  Public
  utility package for writing and reading image metadata

  Python

  •0•0•0•0•Updated Oct 31, 2024Oct 31, 2024

• bioawk.CAS

  Public
  extensions to heng li's bioawk

  C

  •

  MIT License

  •0•0•0•0•Updated Oct 19, 2024Oct 19, 2024

• color_finder

  Public
  Can find % colors in image based on RGB or HSV values. Can be used for basic image sorting by color.

  0•0•0•0•Updated Sep 28, 2024Sep 28, 2024

• publications_finder

  Public
  A tool to aggregate institutional publications, powered by the OpenAlex API.

  Jupyter Notebook

  •

  GNU General Public License v3.0

  •0•0•2•0•Updated Sep 27, 2024Sep 27, 2024

• collections_tools

  Public
  A submodule storing util functions for use in ibss collections image server, data cleaning and data import related tasks

  0•0•0•0•Updated Sep 24, 2024Sep 24, 2024

• PythonLife

  Public
  Jupyter Notebook

  •0•2•0•0•Updated Sep 18, 2024Sep 18, 2024

• galapagos_island_mapper

  Public
  Python

  •1•1•0•0•Updated Aug 17, 2024Aug 17, 2024

• citations_finder

  Public
  Python

  •

  GNU General Public License v3.0

  •4•1•0•1•Updated Aug 14, 2024Aug 14, 2024

• HiFiMiTie

  Public
  HiFiMiTie -- Find & Analyze Metazoan Mitochondria from HiFi reads

  Shell

  •

  MIT License

  •0•0•0•0•Updated Aug 5, 2024Aug 5, 2024

• CASES

  Public
  Python

  •0•1•0•2•Updated Jul 26, 2024Jul 26, 2024

• mySyntenyPortal

  Public
  A stand-alone application for constructing websites for visualizing and browsing synteny blocks

  JavaScript

  •

  GNU General Public License v3.0

  •5•0•0•0•Updated Mar 7, 2024Mar 7, 2024

• NASA-Project-3317

  Public
  0•0•0•0•Updated Jan 17, 2024Jan 17, 2024

• web-asset-server

  Public
  Sample attachment server implementation for Specify.

  Python

  •15•2•0•0•Updated Oct 6, 2023Oct 6, 2023

• Dalman_Twin_Microbiome_Scripts

  Public
  Shell Scripts used in the Dalman et al. twin microbiome study

  R

  •

  MIT License

  •0•0•0•0•Updated May 10, 2023May 10, 2023

• cas-dspace-dev

  Public archive
  TeX

  •1•0•0•31•Updated Mar 8, 2023Mar 8, 2023

• kompressor

  Public
  finds and compresses large ascii files in parallel using pigz

  Python

  •0•0•0•0•Updated Mar 6, 2023Mar 6, 2023

• minibar

  Public
  Dual barcode and primer demultiplexing for MinION sequenced reads

  Python

  •

  BSD 2-Clause "Simplified" License

  •5•39•10•0•Updated Jan 19, 2023Jan 19, 2023

• webportal-installer-deprecated

  Public
  The Specify Web Portal

  JavaScript

  •

  GNU General Public License v2.0

  •11•0•0•0•Updated Jul 26, 2022Jul 26, 2022

• Basic-R

  Public
  A one script introduction to R from scratch

  R

  •0•1•0•0•Updated Apr 25, 2022Apr 25, 2022

• antcolor

  Public
  A research project to analyze ant coloration using data from AntWeb.org handled with Elasticsearch.

  Python

  •0•2•0•0•Updated Oct 30, 2021Oct 30, 2021