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TraceGroomer

TraceGroomer allows you to transform your corrected Tracer (a.k.a Labeled) Metabolomics data, into the files required by DIMet, and perform it in seconds!

For requirements and install, please go to the README. This Wiki page assumes that you have already installed the tool.

Important

When using TraceGroomer, please cite:

Galvis J, Guyon J, Dartigues B, Hecht H, Grüning B, Specque F, Soueidan H, Karkar S, Daubon T, Nikolski M. DIMet: An open-source tool for Differential analysis of targeted Isotope-labeled Metabolomics data. Bioinformatics 2024; btae282. https://doi.org/10.1093/bioinformatics/btae282

News for Galaxy users:

TraceGroomer is in Galaxy! Please visit our user-friendly interface in Galaxy Europe TraceGroomer. There you will find the instructions for using the tool in the Galaxy interface, and the zenodo link of downloadable data examples.

New: Tracegroomer is now also available in Workflow4Metabolomics (W4M) at https://workflow4metabolomics.usegalaxy.fr/, accessible by typing tracegroomer in the search bar. All the instructions are the same for both Europe and W4M instances of Galaxy.

Sections

TraceGroomer documentation is divided into the following sections (click on each section to expand):

1 How to use TraceGroomer (command line version)

2 Input files

3 Supported input formats

4 Advanced options

5 Output

6 Getting Help

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