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pytximport 0.7.0
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@maltekuehl maltekuehl released this 29 Jul 16:53
· 64 commits to main since this release
0.7.0
83605b1
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API

  • Added support for RSEM gene-level quantification files. Previously, it was already possible to read RSEM transcript level data from a .tsv file. Now, not only can RMEM transcript data be read in by setting data_type to rsem, but if gene_level is set to True, existing gene-level data can be read in and aggregated by pytximport.
  • Added support for gzipped files when reading in tabular data with data_type set tsv.

Other changes

  • pytximport is now available through Bioconda and an install badge has been added to the README and the documentation.
  • Added unit tests to check RSEM gene-level quantification for correctness.
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