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Data Science in Systems Biology

The research group Data Science in Systems Biology at the School of Life Sciences, Technical University of Munich

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  1. OpenLabFramework OpenLabFramework Public archive

    A open source framework for research data management. DEMO at https://dockerhts.compbio.sdu.dk/OpenLabFramework/login/auth

    JavaScript 21 6

  2. data-leakage-ppi-prediction data-leakage-ppi-prediction Public

    Code associated with the paper 'Cracking the blackbox of deep sequence-based protein-protein interaction prediction'

    C++ 18 1

  3. TF-Prioritizer TF-Prioritizer Public

    Bioinformatics pipeline to identify differentially active transcription factors between conditions using expression and epigenetic data

    Java 13

  4. SPONGE SPONGE Public

    Sparse Partial correlation ON Gene Expression - an R package for fast and robust ceRNA network inference

    R 11 9

  5. BiCoN BiCoN Public

    Network Constrained Biclustering PyPI package

    Python 10 2

  6. namco namco Public

    R 9 2

Repositories

Showing 10 of 84 repositories
  • drevalpy Public

    DrEval is a toolkit that ensures drug response prediction evaluations are statistically sound, biologically meaningful, and reproducible.

    daisybio/drevalpy’s past year of commit activity
    Python 3 GPL-3.0 0 16 (1 issue needs help) 0 Updated Oct 4, 2024
  • daisybio/SPONGE-web-backend’s past year of commit activity
    Python 0 GPL-3.0 0 0 5 Updated Oct 2, 2024
  • daisybio/teff-treg-satb1-analysis’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Oct 2, 2024
  • DIGGER Public Forked from louadi/DIGGER

    Fork for developing Digger 2.0

    daisybio/DIGGER’s past year of commit activity
    Python 0 GPL-3.0 3 6 (1 issue needs help) 1 Updated Sep 30, 2024
  • daisybio/SPONGE-web-frontend’s past year of commit activity
    TypeScript 0 GPL-3.0 0 1 2 Updated Sep 20, 2024
  • daisybio/CIRCEST-downstream’s past year of commit activity
    R 0 0 0 0 Updated Sep 18, 2024
  • IHEC-AS Public
    daisybio/IHEC-AS’s past year of commit activity
    R 0 GPL-3.0 1 0 0 Updated Sep 3, 2024
  • daisybio/DysRegNet_workflow’s past year of commit activity
    Python 0 GPL-3.0 0 0 0 Updated Aug 29, 2024
  • easyLiftover Public

    This repository wraps the pyliftover package to provide an option for lifting over common bioinformatics file types.

    daisybio/easyLiftover’s past year of commit activity
    Python 0 GPL-3.0 0 2 1 Updated Aug 22, 2024
  • namco Public
    daisybio/namco’s past year of commit activity
    R 9 GPL-3.0 2 24 0 Updated Aug 21, 2024

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