Repositories list

• drevalpy

  Public
  DrEval is a toolkit that ensures drug response prediction evaluations are statistically sound, biologically meaningful, and reproducible.

  bioinformaticsmachinedrug-response-prediction

  Python

  •

  GNU General Public License v3.0

  •0•3•16•0•Updated Oct 4, 2024Oct 4, 2024

• SPONGE-web-backend

  Public
  Python

  •

  GNU General Public License v3.0

  •0•0•0•5•Updated Oct 2, 2024Oct 2, 2024

• teff-treg-satb1-analysis

  Public
  Jupyter Notebook

  •0•0•0•0•Updated Oct 2, 2024Oct 2, 2024

• DIGGER

  Public
  Fork for developing Digger 2.0

  Python

  •

  GNU General Public License v3.0

  •3•0•6•1•Updated Sep 30, 2024Sep 30, 2024

• SPONGE-web-frontend

  Public
  TypeScript

  •

  GNU General Public License v3.0

  •0•0•1•2•Updated Sep 20, 2024Sep 20, 2024

• CIRCEST-downstream

  Public
  R

  •0•0•0•0•Updated Sep 18, 2024Sep 18, 2024

• IHEC-AS

  Public
  R

  •

  GNU General Public License v3.0

  •1•0•0•0•Updated Sep 3, 2024Sep 3, 2024

• DysRegNet_workflow

  Public
  Python

  •

  GNU General Public License v3.0

  •0•0•0•0•Updated Aug 29, 2024Aug 29, 2024

• easyLiftover

  Public
  This repository wraps the pyliftover package to provide an option for lifting over common bioinformatics file types.

  bioinformaticsbioinformatics-tool

  Python

  •

  GNU General Public License v3.0

  •0•0•2•1•Updated Aug 22, 2024Aug 22, 2024

• namco

  Public
  R

  •

  GNU General Public License v3.0

  •2•9•24•0•Updated Aug 21, 2024Aug 21, 2024

• CADDIE-backend

  Public
  Python

  •1•0•0•0•Updated Aug 16, 2024Aug 16, 2024

• BiCoN

  Public
  Network Constrained Biclustering PyPI package

  Python

  •

  GNU General Public License v3.0

  •2•10•0•1•Updated Aug 9, 2024Aug 9, 2024

• SPONGE

  Public
  Sparse Partial correlation ON Gene Expression - an R package for fast and robust ceRNA network inference

  R

  •9•11•3•1•Updated Aug 6, 2024Aug 6, 2024

• Ex-Breast-Cancer-Survival

  Public
  Jupyter Notebook

  •

  GNU General Public License v3.0

  •0•1•0•0•Updated Jul 25, 2024Jul 25, 2024

• nedrexdb

  Public
  A repository containing the code for building and hosting NeDRexDB

  Python

  •

  GNU General Public License v3.0

  •3•0•0•3•Updated Jul 18, 2024Jul 18, 2024

• HiTSeekR

  Public
  An R shiny web application for the analysis of various types of high-throughput screening data

  R

  •

  GNU General Public License v3.0

  •3•4•4•0•Updated Jun 9, 2024Jun 9, 2024

• CyTOF_RPs_MPs

  Public
  R

  •0•1•0•0•Updated Jun 7, 2024Jun 7, 2024

• cyanus

  Public
  A Systematic Comparison of Differential Analysis Methods for CyTOF Data & CYANUS App

  R

  •

  GNU General Public License v3.0

  •2•4•8•0•Updated Jun 3, 2024Jun 3, 2024

• gene_signatures

  Public
  HTML

  •

  GNU General Public License v3.0

  •1•0•0•0•Updated May 31, 2024May 31, 2024

• NeEDL

  Public
  C++

  •

  GNU General Public License v3.0

  •1•4•5•2•Updated Apr 29, 2024Apr 29, 2024

• DysRegNet_package

  Public
  Inferring patient-specific regulatory alterations

  bioinformaticsrna-seqstatistics+ 4systems-biologytranscriptomicslinear-modelsgene-regulatory-network

  Jupyter Notebook

  •

  GNU General Public License v3.0

  •0•2•0•0•Updated Apr 18, 2024Apr 18, 2024

• CyEMD_package

  Public
  CyEMD: A differential analysis method developed for CyTOF data

  R

  •0•0•0•0•Updated Apr 2, 2024Apr 2, 2024

• Dimmer

  Public
  Java

  •

  GNU General Public License v3.0

  •1•0•2•1•Updated Mar 20, 2024Mar 20, 2024

• TF-Prioritizer

  Public
  Bioinformatics pipeline to identify differentially active transcription factors between conditions using expression and epigenetic data

  transcription-factorsbioinformatics-pipeline

  Java

  •

  GNU General Public License v3.0

  •0•13•6•1•Updated Mar 12, 2024Mar 12, 2024

• EEN-sPLSDA

  Public
  HTML

  •0•0•0•0•Updated Mar 8, 2024Mar 8, 2024

• caddiepy

  Public
  The python package to the Cancer Driver Drug Interaction Explorer (CADDIE)

  Python

  •

  GNU General Public License v3.0

  •0•0•0•0•Updated Feb 15, 2024Feb 15, 2024

• CADDIE-frontend

  Public
  TypeScript

  •0•0•0•0•Updated Feb 7, 2024Feb 7, 2024

• cyanus_functions

  Public
  R

  •0•0•0•0•Updated Jan 31, 2024Jan 31, 2024

• 16S-rRNA-gene-Functional_benchmark_profiling

  Public
  C#

  •0•1•0•0•Updated Jan 29, 2024Jan 29, 2024

• Cyanus-Paper-Code

  Public
  Code associated with the paper "A systematic comparison of novel and existing differential analysis methods for CyTOF data", more specifically, the data generation and the DE methdos comparison

  R

  •

  GNU General Public License v3.0

  •0•0•0•0•Updated Jan 25, 2024Jan 25, 2024