Clarify the docker commands for compilation

[luiscla27]

This is the very first time I use docker, and I'm learning. Thas pwd told me nothing, I thought it was a password.

But the correct value is the project path.

I was able to compile after this fix:

C:\full-path-to-my-biosim4-folder\biosim4\>docker run --rm -ti -v C:\full-path-to-my-biosim4-folder\biosim4:/app --name biosim biosim4 make
test -d bin/Debug || mkdir -p bin/Debug
test -d obj/Debug/src || mkdir -p obj/Debug/src
c++ -Wall -pedantic -std=c++17 -fexceptions -fopenmp -I/usr/include/opencv4  -g -c src/analysis.cpp -o obj/Debug/src/analysis.o
c++ -Wall -pedantic -std=c++17 -fexceptions -fopenmp -I/usr/include/opencv4  -g -c src/basicTypes.cpp -o obj/Debug/src/basicTypes.o
c++ -Wall -pedantic -std=c++17 -fexceptions -fopenmp -I/usr/include/opencv4  -g -c src/createBarrier.cpp -o obj/Debug/src/createBarrier.o
c++ -Wall -pedantic -std=c++17 -fexceptions -fopenmp -I/usr/include/opencv4  -g -c src/endOfGeneration.cpp -o obj/Debug/src/endOfGeneration.o
c++ -Wall -pedantic -std=c++17 -fexceptions -fopenmp -I/usr/include/opencv4  -g -c src/endOfSimStep.cpp -o obj/Debug/src/endOfSimStep.o
c++ -Wall -pedantic -std=c++17 -fexceptions -fopenmp -I/usr/include/opencv4  -g -c src/executeActions.cpp -o obj/Debug/src/executeActions.o
c++ -Wall -pedantic -std=c++17 -fexceptions -fopenmp -I/usr/include/opencv4  -g -c src/feedForward.cpp -o obj/Debug/src/feedForward.o
c++ -Wall -pedantic -std=c++17 -fexceptions -fopenmp -I/usr/include/opencv4  -g -c src/genome-compare.cpp -o obj/Debug/src/genome-compare.o
c++ -Wall -pedantic -std=c++17 -fexceptions -fopenmp -I/usr/include/opencv4  -g -c src/genome.cpp -o obj/Debug/src/genome.o
c++ -Wall -pedantic -std=c++17 -fexceptions -fopenmp -I/usr/include/opencv4  -g -c src/getSensor.cpp -o obj/Debug/src/getSensor.o
c++ -Wall -pedantic -std=c++17 -fexceptions -fopenmp -I/usr/include/opencv4  -g -c src/grid.cpp -o obj/Debug/src/grid.o
c++ -Wall -pedantic -std=c++17 -fexceptions -fopenmp -I/usr/include/opencv4  -g -c src/imageWriter.cpp -o obj/Debug/src/imageWriter.o
c++ -Wall -pedantic -std=c++17 -fexceptions -fopenmp -I/usr/include/opencv4  -g -c src/indiv.cpp -o obj/Debug/src/indiv.o
c++ -Wall -pedantic -std=c++17 -fexceptions -fopenmp -I/usr/include/opencv4  -g -c src/main.cpp -o obj/Debug/src/main.o
c++ -Wall -pedantic -std=c++17 -fexceptions -fopenmp -I/usr/include/opencv4  -g -c src/params.cpp -o obj/Debug/src/params.o
c++ -Wall -pedantic -std=c++17 -fexceptions -fopenmp -I/usr/include/opencv4  -g -c src/peeps.cpp -o obj/Debug/src/peeps.o
c++ -Wall -pedantic -std=c++17 -fexceptions -fopenmp -I/usr/include/opencv4  -g -c src/random.cpp -o obj/Debug/src/random.o
c++ -Wall -pedantic -std=c++17 -fexceptions -fopenmp -I/usr/include/opencv4  -g -c src/signals.cpp -o obj/Debug/src/signals.o
c++ -Wall -pedantic -std=c++17 -fexceptions -fopenmp -I/usr/include/opencv4  -g -c src/simulator.cpp -o obj/Debug/src/simulator.o
c++ -Wall -pedantic -std=c++17 -fexceptions -fopenmp -I/usr/include/opencv4  -g -c src/spawnNewGeneration.cpp -o obj/Debug/src/spawnNewGeneration.o
c++ -Wall -pedantic -std=c++17 -fexceptions -fopenmp -I/usr/include/opencv4  -g -c src/survival-criteria.cpp -o obj/Debug/src/survival-criteria.o
c++ -Wall -pedantic -std=c++17 -fexceptions -fopenmp -I/usr/include/opencv4  -g -c src/unitTestBasicTypes.cpp -o obj/Debug/src/unitTestBasicTypes.o
c++ -Wall -pedantic -std=c++17 -fexceptions -fopenmp -I/usr/include/opencv4  -g -c src/unitTestConnectNeuralNetWiringFromGenome.cpp -o obj/Debug/src/unitTestConnectNeuralNetWiringFromGenome.o
c++ -Wall -pedantic -std=c++17 -fexceptions -fopenmp -I/usr/include/opencv4  -g -c src/unitTestGridVisitNeighborhood.cpp -o obj/Debug/src/unitTestGridVisitNeighborhood.o
c++ -o bin/Debug/biosim4 obj/Debug/src/analysis.o obj/Debug/src/basicTypes.o obj/Debug/src/createBarrier.o obj/Debug/src/endOfGeneration.o obj/Debug/src/endOfSimStep.o obj/Debug/src/executeActions.o obj/Debug/src/feedForward.o obj/Debug/src/genome-compare.o obj/Debug/src/genome.o obj/Debug/src/getSensor.o obj/Debug/src/grid.o obj/Debug/src/imageWriter.o obj/Debug/src/indiv.o obj/Debug/src/main.o obj/Debug/src/params.o obj/Debug/src/peeps.o obj/Debug/src/random.o obj/Debug/src/signals.o obj/Debug/src/simulator.o obj/Debug/src/spawnNewGeneration.o obj/Debug/src/survival-criteria.o obj/Debug/src/unitTestBasicTypes.o obj/Debug/src/unitTestConnectNeuralNetWiringFromGenome.o obj/Debug/src/unitTestGridVisitNeighborhood.o -lopencv_core -lopencv_video -lopencv_videoio -lgomp -lpthread -fopenmp
test -d bin/Release || mkdir -p bin/Release
test -d obj/Release/src || mkdir -p obj/Release/src
c++ -Wall -pedantic -std=c++17 -fexceptions -fopenmp -I/usr/include/opencv4  -O3 -c src/analysis.cpp -o obj/Release/src/analysis.o
c++ -Wall -pedantic -std=c++17 -fexceptions -fopenmp -I/usr/include/opencv4  -O3 -c src/basicTypes.cpp -o obj/Release/src/basicTypes.o
c++ -Wall -pedantic -std=c++17 -fexceptions -fopenmp -I/usr/include/opencv4  -O3 -c src/createBarrier.cpp -o obj/Release/src/createBarrier.o
c++ -Wall -pedantic -std=c++17 -fexceptions -fopenmp -I/usr/include/opencv4  -O3 -c src/endOfGeneration.cpp -o obj/Release/src/endOfGeneration.o
c++ -Wall -pedantic -std=c++17 -fexceptions -fopenmp -I/usr/include/opencv4  -O3 -c src/endOfSimStep.cpp -o obj/Release/src/endOfSimStep.o
c++ -Wall -pedantic -std=c++17 -fexceptions -fopenmp -I/usr/include/opencv4  -O3 -c src/executeActions.cpp -o obj/Release/src/executeActions.o
c++ -Wall -pedantic -std=c++17 -fexceptions -fopenmp -I/usr/include/opencv4  -O3 -c src/feedForward.cpp -o obj/Release/src/feedForward.o
c++ -Wall -pedantic -std=c++17 -fexceptions -fopenmp -I/usr/include/opencv4  -O3 -c src/genome-compare.cpp -o obj/Release/src/genome-compare.o
c++ -Wall -pedantic -std=c++17 -fexceptions -fopenmp -I/usr/include/opencv4  -O3 -c src/genome.cpp -o obj/Release/src/genome.o
c++ -Wall -pedantic -std=c++17 -fexceptions -fopenmp -I/usr/include/opencv4  -O3 -c src/getSensor.cpp -o obj/Release/src/getSensor.o
c++ -Wall -pedantic -std=c++17 -fexceptions -fopenmp -I/usr/include/opencv4  -O3 -c src/grid.cpp -o obj/Release/src/grid.o
c++ -Wall -pedantic -std=c++17 -fexceptions -fopenmp -I/usr/include/opencv4  -O3 -c src/imageWriter.cpp -o obj/Release/src/imageWriter.o
c++ -Wall -pedantic -std=c++17 -fexceptions -fopenmp -I/usr/include/opencv4  -O3 -c src/indiv.cpp -o obj/Release/src/indiv.o
c++ -Wall -pedantic -std=c++17 -fexceptions -fopenmp -I/usr/include/opencv4  -O3 -c src/main.cpp -o obj/Release/src/main.o
c++ -Wall -pedantic -std=c++17 -fexceptions -fopenmp -I/usr/include/opencv4  -O3 -c src/params.cpp -o obj/Release/src/params.o
c++ -Wall -pedantic -std=c++17 -fexceptions -fopenmp -I/usr/include/opencv4  -O3 -c src/peeps.cpp -o obj/Release/src/peeps.o
c++ -Wall -pedantic -std=c++17 -fexceptions -fopenmp -I/usr/include/opencv4  -O3 -c src/random.cpp -o obj/Release/src/random.o
c++ -Wall -pedantic -std=c++17 -fexceptions -fopenmp -I/usr/include/opencv4  -O3 -c src/signals.cpp -o obj/Release/src/signals.o
c++ -Wall -pedantic -std=c++17 -fexceptions -fopenmp -I/usr/include/opencv4  -O3 -c src/simulator.cpp -o obj/Release/src/simulator.o
c++ -Wall -pedantic -std=c++17 -fexceptions -fopenmp -I/usr/include/opencv4  -O3 -c src/spawnNewGeneration.cpp -o obj/Release/src/spawnNewGeneration.o
c++ -Wall -pedantic -std=c++17 -fexceptions -fopenmp -I/usr/include/opencv4  -O3 -c src/survival-criteria.cpp -o obj/Release/src/survival-criteria.o
c++ -Wall -pedantic -std=c++17 -fexceptions -fopenmp -I/usr/include/opencv4  -O3 -c src/unitTestBasicTypes.cpp -o obj/Release/src/unitTestBasicTypes.o
c++ -Wall -pedantic -std=c++17 -fexceptions -fopenmp -I/usr/include/opencv4  -O3 -c src/unitTestConnectNeuralNetWiringFromGenome.cpp -o obj/Release/src/unitTestConnectNeuralNetWiringFromGenome.o
c++ -Wall -pedantic -std=c++17 -fexceptions -fopenmp -I/usr/include/opencv4  -O3 -c src/unitTestGridVisitNeighborhood.cpp -o obj/Release/src/unitTestGridVisitNeighborhood.o
c++ -o bin/Release/biosim4 obj/Release/src/analysis.o obj/Release/src/basicTypes.o obj/Release/src/createBarrier.o obj/Release/src/endOfGeneration.o obj/Release/src/endOfSimStep.o obj/Release/src/executeActions.o obj/Release/src/feedForward.o obj/Release/src/genome-compare.o obj/Release/src/genome.o obj/Release/src/getSensor.o obj/Release/src/grid.o obj/Release/src/imageWriter.o obj/Release/src/indiv.o obj/Release/src/main.o obj/Release/src/params.o obj/Release/src/peeps.o obj/Release/src/random.o obj/Release/src/signals.o obj/Release/src/simulator.o obj/Release/src/spawnNewGeneration.o obj/Release/src/survival-criteria.o obj/Release/src/unitTestBasicTypes.o obj/Release/src/unitTestConnectNeuralNetWiringFromGenome.o obj/Release/src/unitTestGridVisitNeighborhood.o -lopencv_core -lopencv_video -lopencv_videoio -lgomp -lpthread -fopenmp -O3 -s

[davidrmiller]

Hi @luiscla27, thanks for this PR. It looks good to me, but I'm not a docker person, so, before updating the documentation, I'd like to appeal to the community for a review of the suggested wording for accuracy and clarity.

[davidrmiller]

Thanks for the refinements. Appealing to the community for an independent review and confirmation.

[mathematicalmichael]

@luiscla27 apologies for the presumptions of knowledge in the docker contribution. my impression was that the docker-on-windows community has largely moved to "just use Linux" to avoid many headaches, so I presumed users would just be using the WSL layer for docker interactions on Windows.

thanks for the contribution. I left some suggestions but otherwise LGTM

[mathematicalmichael]

wasn't technically necessary before, but it seems like the option is here now so it can't hurt to include it.