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replace format by f-strings #54

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Jan 29, 2024
Merged

replace format by f-strings #54

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47 changes: 22 additions & 25 deletions bfabric/scripts/bfabric_read.py
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Original file line number Diff line number Diff line change
@@ -1,26 +1,25 @@
#!/usr/bin/env python3
# -*- coding: latin1 -*-

"""
Copyright (C) 2014, 2019 Functional Genomics Center Zurich ETHZ|UZH. All rights reserved.

Author:
Christian Panse <cp@fgcz.ethz.ch>
"""B-Fabric command line reader

Licensed under GPL version 3
Copyright:
2014, 2019, 2024 Functional Genomics Center Zurich ETHZ|UZH. All rights reserved.

$HeadURL: http://fgcz-svn.uzh.ch/repos/scripts/trunk/linux/bfabric/apps/python/bfabric/scripts/bfabric_list.py $
$Id: bfabric_list.py 2541M 2017-08-21 13:06:30Z (local) $
Author:
Christian Panse <cp@fgcz.ethz.ch>

License:
GPL version 3

http://fgcz-bfabric.uzh.ch/bfabric/executable?wsdl
See also:
http://fgcz-bfabric.uzh.ch/bfabric/executable?wsdl
"""

import signal
import sys
import time
import bfabric
import json


def signal_handler(signal, frame):
Expand All @@ -29,13 +28,13 @@ def signal_handler(signal, frame):

signal.signal(signal.SIGINT, signal_handler)

def print_color_msg(msg, color="93"):
msg = "\033[{color}m--- {} ---\033[0m\n".format(msg, color=color)
sys.stderr.write(msg)
def print_color_msg(msg, color = "93"):
sys.stderr.write(f"\033[{color}m--- {msg} ---\033[0m\n")

def usage():
print(__doc__)
print("usage:\n")
msg = "\t{} <endpoint> <attribute> <value>".format(sys.argv[0])
msg = f"\t{sys.argv[0]} <endpoint> <attribute> <value>"
print(msg)
msg = "\t{} <endpoint>\n\n".format(sys.argv[0])
print(msg)
Expand Down Expand Up @@ -63,9 +62,9 @@ def usage():
query_obj[attribute] = name

if endpoint in bfabric.endpoints:
print_color_msg("query = {}".format(query_obj))
print_color_msg(f"query = {query_obj}")
start_time = time.time()
res = B.read_object(endpoint=endpoint, obj=query_obj)
res = B.read_object(endpoint = endpoint, obj = query_obj)
end_time = time.time()

if res is None:
Expand All @@ -82,31 +81,29 @@ def usage():
if len(res) < 2:
print(res[0])
except Exception as e:
print_color_msg("invalid query. {}.".format(e), color=95)
print_color_msg(f"invalid query. {e}.", color=95)
sys.exit(1)

try:

print_color_msg("possible attributes are: {}.".format((", ".join([at[0] for at in res[0]]))))

except Exception as e:
print_color_msg("Exception: {}".format(e))
print_color_msg(f"Exception: {e}")

for x in res:
try:
print ("{}\t{}\t{}\t{}\t{}".format(x._id, x.createdby, x.modified, x.name, x.groupingvar.name))
print(f"{x._id}\t{x.createdby}\t{x.modified}\t{x.name}\t{x.groupingvar.name}")
except Exception as e:
print ("{}\t{}\t{}".format(x._id, x.createdby, x.modified))
print(f"{x._id}\t{x.createdby}\t{x.modified}")


else:
print_color_msg ("The first argument must be a valid endpoint.", color=95)
print_color_msg("The first argument must be a valid endpoint.", color=95)
usage()
sys.exit(1)

try:
print_color_msg("number of query result items = {}".format(len(res)))
print_color_msg(f"number of query result items = {len(res)}")
except:
pass

print_color_msg("query time = {} seconds".format(round(end_time - start_time, 2)))
print_color_msg(f"query time = {round(end_time - start_time, 2)} seconds")
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