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More use of base64 to improve test stability. #21383

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Merged
jmchilton merged 1 commit into from
Dec 7, 2025
Merged

More use of base64 to improve test stability. #21383

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16 changes: 8 additions & 8 deletions lib/galaxy_test/api/test_tools.py
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Original file line number Diff line number Diff line change
Expand Up @@ -3013,9 +3013,8 @@ def test_run_deferred_dataset_cached(self, history_id):

@skip_without_tool("metadata_bam")
def test_run_deferred_dataset_with_metadata_options_filter(self, history_id):
details = self.dataset_populator.create_deferred_hda(
history_id, "https://raw.githubusercontent.com/galaxyproject/galaxy/dev/test-data/1.bam", ext="bam"
)
url_1 = self.dataset_populator.base64_url_for_test_file("1.bam")
details = self.dataset_populator.create_deferred_hda(history_id, url_1, ext="bam")
inputs = {"input_bam": dataset_to_param(details), "ref_names": "chrM"}
run_response = self.dataset_populator.run_tool(tool_id="metadata_bam", inputs=inputs, history_id=history_id)
output = run_response["outputs"][0]
Expand All @@ -3028,9 +3027,8 @@ def test_run_deferred_dataset_with_metadata_options_filter(self, history_id):

@skip_without_tool("pileup")
def test_metadata_validator_on_deferred_input(self, history_id):
deferred_bam_details = self.dataset_populator.create_deferred_hda(
history_id, "https://raw.githubusercontent.com/galaxyproject/galaxy/dev/test-data/1.bam", ext="bam"
)
url_1 = self.dataset_populator.base64_url_for_test_file("1.bam")
deferred_bam_details = self.dataset_populator.create_deferred_hda(history_id, url_1, ext="bam")
fasta1_contents = open(self.get_filename("1.fasta")).read()
fasta = self.dataset_populator.new_dataset(history_id, content=fasta1_contents)
inputs = {"input1": dataset_to_param(deferred_bam_details), "reference": dataset_to_param(fasta)}
Expand Down Expand Up @@ -3123,10 +3121,11 @@ def test_allow_uri_if_protocol_on_collection_with_deferred(self, history_id):

@skip_without_tool("cat1")
def test_run_deferred_mapping(self, history_id: str):
url_1 = self.dataset_populator.base64_url_for_test_file("4.bed")
elements = [
{
"src": "url",
"url": "https://raw.githubusercontent.com/galaxyproject/galaxy/dev/test-data/4.bed",
"url": url_1,
"info": "my cool bed",
"deferred": True,
"ext": "bed",
Expand Down Expand Up @@ -3163,10 +3162,11 @@ def test_run_deferred_mapping(self, history_id: str):

@skip_without_tool("cat_list")
def test_run_deferred_list_multi_data_reduction(self, history_id: str):
url_1 = self.dataset_populator.base64_url_for_test_file("4.bed")
elements = [
{
"src": "url",
"url": "https://raw.githubusercontent.com/galaxyproject/galaxy/dev/test-data/4.bed",
"url": url_1,
"info": "my cool bed",
"deferred": True,
"ext": "bed",
Expand Down
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