A completely refurbished taxonomy tools collection

packages/package_gb_taxonomy_8d245994d7/.shed.yml

@@ -0,0 +1,10 @@
+categories:
+- Tool Dependency Packages
+description: Compiles and installs Sergei Pond's GenBank taxonomy tools.
+long_description: |
+  These are four simple utilities which perform certain manipulations and
+  visualization tasks on GenBank taxonomic information.
+name: package_gb_taxonomy_8d245994d7
+owner: iuc
+remote_repository_url: https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_gb_taxonomy_8d245994d7
+type: tool_dependency_definition

packages/package_gb_taxonomy_8d245994d7/tool_dependencies.xml

@@ -0,0 +1,24 @@
+<?xml version="1.0"?>
+<tool_dependency>
+    <package name="cmake" version="3.2.3">
+        <repository name="package_cmake_3_2_3" owner="iuc" prior_installation_required="True" />
+    </package>
+    <package name="gb_taxonomy" version="8d245994d7">
+        <install version="1.0">
+            <actions>
+                <action type="download_by_url" sha256sum="56b746cf6f0da7768bc7ef0c31c19bd014fdbc8e11aa90d7779d89ccfae12971"
+                        target_filename="gb_taxonomy_tools-8d245994d77546daac1f595b87a110a620426b4c.tar.gz">https://github.com/spond/gb_taxonomy_tools/archive/8d245994d77546daac1f595b87a110a620426b4c.tar.gz</action>
+                <action type="set_environment_for_install">
+                    <repository name="package_cmake_3_2_3" owner="iuc" prior_installation_required="True">
+                        <package name="cmake" version="3.2.3" />
+                    </repository>
+                </action>
+                <action type="shell_command">cmake -D INSTALL_PREFIX:PATH=$INSTALL_DIR .</action>
+                <action type="make_install" />
+                <action type="set_environment">
+                    <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
+                </action>
+            </actions>
+        </install>
+    </package>
+</tool_dependency>

packages/package_ghostscript_9_10/.shed.yml

@@ -0,0 +1,7 @@
+categories:
+- Tool Dependency Packages
+description: package_ghostscript_9_10
+name: package_ghostscript_9_10
+owner: iuc
+remote_repository_url: https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_ghostscript_9_10
+type: tool_dependency_definition

packages/package_ghostscript_9_10/tool_dependencies.xml

@@ -0,0 +1,43 @@
+<?xml version="1.0"?>
+    <tool_dependency>
+        <package name="ghostscript" version="9.10">
+            <install version="1.0">
+                <actions_group>
+                    <actions architecture="x86_64" os="darwin">
+                        <action type="download_by_url" sha256sum="074fec88899afbcb2fc084bae3c059055d2d9e9b53cce23f076087f956071663">
+                            http://depot.galaxyproject.org/package/darwin/x86_64/ghostscript/ghostscript-9.10-Darwin-x86_64.tgz
+                        </action>
+                        <action type="move_directory_files">
+                            <source_directory>.</source_directory>
+                            <destination_directory>$INSTALL_DIR</destination_directory>
+                        </action>
+                    </actions>
+                    <actions architecture="x86_64" os="linux">
+                        <action type="download_by_url" sha256sum="ff8ffa17cab67d5365e47703098d370fab8eee6304e4e3497eca164ef73519ce">
+                            http://depot.galaxyproject.org/package/linux/x86_64/ghostscript/ghostscript-9.10-linux-x86_64.tgz
+                        </action>
+                        <action type="move_directory_files">
+                            <source_directory>.</source_directory>
+                            <destination_directory>$INSTALL_DIR</destination_directory>
+                        </action>
+                    </actions>
+                    <actions>
+                        <package name="libx11" version="1.5.0">
+                            <repository name="package_libx11_1_5_0" owner="devteam" prior_installation_required="True" />
+                        </package>
+                        <action type="download_by_url" sha256sum="913fc974433238ffd4e0549ce11ba2a3360d1d159cf5c3b988d72a77acb74d04">
+                            http://downloads.ghostscript.com/public/ghostscript-9.10.tar.gz
+                        </action>
+                        <action type="set_environment_for_install">
+                            <repository name="package_libx11_1_5_0" owner="devteam" prior_installation_required="True" />
+                        </action>
+                        <action type="autoconf" />
+                    </actions>
+                        <action type="set_environment">
+                            <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
+                        </action>
+                </actions_group>
+            </install>
+            <readme />
+        </package>
+    </tool_dependency>

packages/package_setuptools_19_0/tool_dependencies.xml

@@ -1,6 +1,6 @@
 <?xml version="1.0"?>
 <tool_dependency>
-        <package name="setuptools" version="19.0">
+        <package name="setuptools" version="0.19.0">
             <install version="1.0">
                 <actions>
                     <action type="download_by_url" md5sum="b921200449c8b52d62c7e70a47956b69">https://pypi.python.org/packages/source/s/setuptools/setuptools-19.0.tar.gz</action>