Add tabular output to tb-profiler collate #7345
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Co-authored-by: M Bernt <m.bernt@ufz.de>
bgruening
reviewed
Oct 8, 2025
bgruening
reviewed
Oct 8, 2025
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| <outputs> | ||
| <data name="output_txt" format="txt" label="${tool.name} on ${on_string}: Summary Report" from_work_dir="tbprofiler.txt"/> | ||
| <data name="output_txt" format="txt" label="${tool.name} on ${on_string}: Summary Report (txt)" from_work_dir="tbprofiler.txt"/> |
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Yes. Thanks for checking! This is just an update to the label to distinguish the TXT output from the tabular output.
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The txt output is still there. Should it be removed as suggested by @bgruening ?
bgruening
reviewed
Oct 16, 2025
bgruening
reviewed
Oct 16, 2025
bgruening
approved these changes
Oct 16, 2025
bgruening
reviewed
Oct 16, 2025
bgruening
reviewed
Oct 16, 2025
bgruening
reviewed
Oct 16, 2025
bernt-matthias
approved these changes
Oct 17, 2025
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Thanks a lot @buhlentozini !! very apprecited :) |
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Attention: deployment skipped! https://github.com/galaxyproject/tools-iuc/actions/runs/18664642071 |
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Attention: deployment skipped! https://github.com/galaxyproject/tools-iuc/actions/runs/18664642071 |
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Attention: deployment skipped! https://github.com/galaxyproject/tools-iuc/actions/runs/18664642071 |
1 similar comment
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Attention: deployment skipped! https://github.com/galaxyproject/tools-iuc/actions/runs/18664642071 |
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has been deployed |
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This PR:
Adds a tabular output to the tb-profiler collate tool.
The tabular format preserves headers for easy viewing and download in Galaxy. Test data and metadata columns have been updated accordingly.
No other tool functionality was changed.
This PR is focused solely on adding the tabular output to tb-profiler collate
Planemo tests pass with the updated tabular output.