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subworkflows_sequence_to_trimmed_fastq.cwl
APipe Tester edited this page Nov 29, 2021
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sequence (bam or fastqs) to trimmed fastqs
| Name | Label | Description | Type | Secondary Files |
|---|---|---|---|---|
| unaligned | ../types/sequence_data.yml#sequence_data | |||
| adapters | File | |||
| adapter_trim_end | string | |||
| adapter_min_overlap | int | |||
| max_uncalled | int | |||
| min_readlength | int | |||
| unzip_fastqs | boolean? |
| Name | Label | Description | Type | Secondary Files |
|---|---|---|---|---|
| fastqs | File[] | |||
| fastq1 | File | |||
| fastq2 | File |
| Name | CWL Run |
|---|---|
| sequence_to_fastq | tools/sequence_to_fastq.cwl |
| trim_fastq | tools/trim_fastq.cwl |