tools_bcftools_merge.cwl

Documentation for bcftools_merge.cwl

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Docker Requirement

mgibio/bcftools-cwl:1.12

Inputs

Name	Label	Description	Type	Secondary Files
force_merge		resolve duplicate sample names	boolean?
merge_method		method used to merge allow multiallelic indels/snps	{'type': 'enum', 'symbols': ['none', 'snps', 'indels', 'both', 'all', 'id']}
missing_ref		assume genotypes at missing sites are 0/0	boolean?
output_type		output file format	{'type': 'enum', 'symbols': ['b', 'u', 'z', 'v']}
output_vcf_name		output vcf file name	string?
vcfs		input bgzipped tabix indexed vcfs to merge	File[]

Outputs

Name	Label	Description	Type	Secondary Files
merged_sv_vcf			File