Skip to content

Requirements

Jump to bottom
Robert J. Gifford edited this page Sep 26, 2024 · 3 revisions

GLUE can be installed natively running directly on your system or alternatively in a Docker container. The native install option is more complex and requires Oracle Java 1.8.0 or later and set up of a specific named database within MySQL 5.6 or later.

Several GLUE functions also require integration of external software including BLAST+, MAFFT & RAxML. Each of these will need to be installed separately if installing GLUE natively.

The Docker container option requires installation of only the Docker Engine but will require the user to learn some core basic concepts if unfamiliar with the Docker environment.

Overview & Installation

  1. Home
  2. Background
  3. Requirements
  4. Installation

GLUE Concepts

  1. Project Data Model
  2. Interacting with Projects
  3. Alignment Tree Concept

Base Project

  1. Overview
  2. Database Schema
  3. Genome Features
  4. Sequence Data
  5. Alignments
  6. Phylogenetic Trees
  7. Genotyping Tools
  8. Deep Sequencing Data Analysis

Web Implementation

  1. About the Web Version
Clone this wiki locally