Code

Integrated script#5

Code

Merged

agitter merged 15 commits intomastergitter-lab/pathway-parameter-advising:masterfrom integratedScriptgitter-lab/pathway-parameter-advising:integratedScriptCopy head branch name to clipboardNov 16, 2019

+247,370-95,467

Commits

Commits on Nov 8, 2019

• Initial commit to branch for more integrated script. Added bash script and python script for full graphlet creation pipeline. Also added two additional examples without included graphlets.

  csmagnano

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  0783c5e

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• Updated small Readme typo.

  csmagnano

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Commits on Nov 9, 2019

• Test whether Travis CI can install PGD

  agitter

  committed
  157b215

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• Modify path

  agitter

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  b84bb75

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• Make debugging

  agitter

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Commits on Nov 11, 2019

• Fixed issue with network file format causing pgd to fail.

  csmagnano

  committed
  9682a63

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• Remove debugging commands

  agitter

  committed
  87247f5

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Commits on Nov 13, 2019

• Non-code changes to README files and script help text and error messages. Fixed broken links, added installation description, other small wording changes.

  csmagnano

  committed
  7ae2d11

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• Fixed typo in Wnt README

  csmagnano

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  7c35252

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• Changed PGA instillation to grab specific commit.

  csmagnano

  committed
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Commits on Nov 14, 2019

• Made unzipping in runPPA smarter and rm's fail silently, added git dependancy to README, and changed travis to test runPPA.sh instead of the setup script alone.

  

  Magnano

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• Avoid ls cannot access error when checking Reactome files

  agitter

  committed
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• Quiet unzip

  agitter

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• Add readme note about Linux

  agitter

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Commits on Nov 15, 2019

• Added help text changes to makePGDNet.py, which were lost in previous commit.

  

  Magnano

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