reload layout so all fmaps get read in correctly

dwiqc/__version__.py

@@ -1,6 +1,6 @@
 __title__ = 'dwiqc'
 __description__ = 'Quality Assurance Pipeline for Diffusion MR Data'
 __url__ = 'https://github.com/harvard-nrg/dwiqc'
-__version__ = '1.6.8'
+__version__ = '1.6.9'
 __author__ = 'Neuroinformatics Research Group'
 __author_email__ = 'info@neuroinfo.org'

dwiqc/tasks/qsiprep.py

@@ -359,7 +359,10 @@ def execute_fmap_truncation(self):
 		If truncate fmaps is true, this method will go through all of the fmaps in the fmap BIDS dir and make sure they are only one volume in length
 		"""
 		if self._truncate_fmap:
-			fmap_files = self._layout.get(subject=self._sub, session=self._ses, suffix='epi', extension='.nii.gz', return_type='filename')
+
+			layout = BIDSLayout(self._bids)
+
+			fmap_files = layout.get(subject=self._sub, session=self._ses, suffix='epi', extension='.nii.gz', return_type='filename')
 
 			logger.info(f'running truncation on {fmap_files}')