revision fix #2

korem-lab · Sep 30, 2024 · 982a056 · 982a056
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diff --git a/DebiasMClassifier.Rmd b/DebiasMClassifier.Rmd
@@ -230,12 +230,12 @@ l{color: darkgreen}
 
 <div class="seealso">
 **See also:**<br>
-[__DEBIAS-M Classifier Demo__](DebiasMClassifier-demo.html)<br>
+[__Multitask DEBIAS-M Classifier__](MultitaskDebiasMClassifier.html)<br>
 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;
-An example analysis using the DEBIAS-M classifier<br>
+The multitask DEBIAS-M classifier<br>
 [__DebiasMRegressor__](DebiasMRegressor.html)<br>
 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;
 Implementation of a DEBIAS-M regressor<br>
 <br>
-For more background on DEBIAS-M, refer to the scikit-learn to [our manuscript](https://www.biorxiv.org/content/10.1101/2024.02.09.579716v1). 
+For more background on DEBIAS-M, refer to [our manuscript](https://www.biorxiv.org/content/10.1101/2024.02.09.579716v1). 
 
diff --git a/DebiasMClassifier.html b/DebiasMClassifier.html
@@ -665,12 +665,12 @@ <h2>Methods</h2>
 </style>
 <div class="seealso">
 <p><strong>See also:</strong><br> <a
-href="DebiasMClassifier-demo.html"><strong>DEBIAS-M Classifier
-Demo</strong></a><br>        An example analysis using the DEBIAS-M
-classifier<br> <a
+href="MultitaskDebiasMClassifier.html"><strong>Multitask DEBIAS-M
+Classifier</strong></a><br>        The multitask DEBIAS-M classifier<br>
+<a
 href="DebiasMRegressor.html"><strong>DebiasMRegressor</strong></a><br>
        Implementation of a DEBIAS-M regressor<br> <br> For more
-background on DEBIAS-M, refer to the scikit-learn to <a
+background on DEBIAS-M, refer to <a
 href="https://www.biorxiv.org/content/10.1101/2024.02.09.579716v1">our
 manuscript</a>.</p>
 </div>

diff --git a/DebiasMClassifierLogAdd.Rmd b/DebiasMClassifierLogAdd.Rmd
@@ -238,12 +238,12 @@ l{color: darkgreen}
 
 <div class="seealso">
 **See also:**<br>
-[__DEBIAS-M Classifier Log-additive Demo__](DebiasMClassifierLogAdd-demo.html)<br>
+[__DEBIAS-M Regression__](DebiasMRegressor.html)<br>
 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;
-An example analysis using the DEBIAS-M classifier<br>
+Te DEBIAS-M regressor<br>
 [__DebiasMClassifier__](DebiasMClassifier.html)<br>
 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;
 Implementation of a DEBIAS-M regressor<br>
 <br>
-For more background on DEBIAS-M, refer to the scikit-learn to [our manuscript](https://www.biorxiv.org/content/10.1101/2024.02.09.579716v1). 
+For more background on DEBIAS-M, refer to [our manuscript](https://www.biorxiv.org/content/10.1101/2024.02.09.579716v1). 
 
diff --git a/DebiasMClassifierLogAdd.html b/DebiasMClassifierLogAdd.html
diff --git a/DebiasMRegressor.Rmd b/DebiasMRegressor.Rmd
@@ -229,12 +229,12 @@ l{color: darkgreen}
 
 <div class="seealso">
 **See also:**<br>
-[__DEBIAS-M Regressor Demo__](DebiasMRegressor-demo.html)<br>
+[__MultitaskDebiasMRegressor__](MultitaskDebiasMRegressor.html)<br>
 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;
-An example analysis using the DEBIAS-M regressor<br>
+The multitask DEBIAS-M regressor<br>
 [__MultitaskDebiasMClassifier__](ultitaskDebiasMClassifier.html)<br>
 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;
 Implementation of the multitask DEBIAS-M classifier<br>
 <br>
-For more background on DEBIAS-M, refer to the scikit-learn to [our manuscript](https://www.biorxiv.org/content/10.1101/2024.02.09.579716v1). 
+For more background on DEBIAS-M, refer to [our manuscript](https://www.biorxiv.org/content/10.1101/2024.02.09.579716v1). 
 
diff --git a/DebiasMRegressor.html b/DebiasMRegressor.html
@@ -664,12 +664,11 @@ <h2>Methods</h2>
 </style>
 <div class="seealso">
 <p><strong>See also:</strong><br> <a
-href="DebiasMRegressor-demo.html"><strong>DEBIAS-M Regressor
-Demo</strong></a><br>        An example analysis using the DEBIAS-M
-regressor<br> <a
+href="MultitaskDebiasMRegressor.html"><strong>MultitaskDebiasMRegressor</strong></a><br>
+       The multitask DEBIAS-M regressor<br> <a
 href="ultitaskDebiasMClassifier.html"><strong>MultitaskDebiasMClassifier</strong></a><br>
        Implementation of the multitask DEBIAS-M classifier<br> <br> For
-more background on DEBIAS-M, refer to the scikit-learn to <a
+more background on DEBIAS-M, refer to <a
 href="https://www.biorxiv.org/content/10.1101/2024.02.09.579716v1">our
 manuscript</a>.</p>
 </div>

diff --git a/MultitaskDebiasMClassifier.Rmd b/MultitaskDebiasMClassifier.Rmd
@@ -228,12 +228,12 @@ l{color: darkgreen}
 
 <div class="seealso">
 **See also:**<br>
-[__Multitask DEBIAS-M Classifier Demo__](MultitaskDebiasMClassifier-demo.html)<br>
+[__Multitask DEBIAS-M Classifier Demo__](DebiasMRegressor.html)<br>
 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;
-An example analysis using the DEBIAS-M classifier<br>
-[__AdaptationDebiasMClassifier__](DebiasMRegressor.html)<br>
+The DEBIAS-M regressor<br>
+[__OnlineDebiasMClassifier__](OnlineDebiasMClassifier.html)<br>
 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;
-Implementation of a DEBIAS-M regressor<br>
+DEBIAS-M for online corrections<br>
 <br>
-For more background on DEBIAS-M, refer to the scikit-learn to [our manuscript](https://www.biorxiv.org/content/10.1101/2024.02.09.579716v1). 
+For more background on DEBIAS-M, refer to [our manuscript](https://www.biorxiv.org/content/10.1101/2024.02.09.579716v1). 
 
diff --git a/MultitaskDebiasMClassifier.html b/MultitaskDebiasMClassifier.html
@@ -668,12 +668,11 @@ <h2>Methods</h2>
 </style>
 <div class="seealso">
 <p><strong>See also:</strong><br> <a
-href="MultitaskDebiasMClassifier-demo.html"><strong>Multitask DEBIAS-M
-Classifier Demo</strong></a><br>        An example analysis using the
-DEBIAS-M classifier<br> <a
-href="DebiasMRegressor.html"><strong>AdaptationDebiasMClassifier</strong></a><br>
-       Implementation of a DEBIAS-M regressor<br> <br> For more
-background on DEBIAS-M, refer to the scikit-learn to <a
+href="DebiasMRegressor.html"><strong>Multitask DEBIAS-M Classifier
+Demo</strong></a><br>        The DEBIAS-M regressor<br> <a
+href="OnlineDebiasMClassifier.html"><strong>OnlineDebiasMClassifier</strong></a><br>
+       DEBIAS-M for online corrections<br> <br> For more background on
+DEBIAS-M, refer to <a
 href="https://www.biorxiv.org/content/10.1101/2024.02.09.579716v1">our
 manuscript</a>.</p>
 </div>

diff --git a/MultitaskDebiasMRegressor.Rmd b/MultitaskDebiasMRegressor.Rmd
@@ -228,12 +228,12 @@ l{color: darkgreen}
 
 <div class="seealso">
 **See also:**<br>
-[__DEBIAS-M Regressor Demo__](DebiasMRegressor.html)<br>
+[__DEBIAS-MRegressor__](DebiasMRegressor.html)<br>
 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;
 The single-task DEBIAS-M regressor<br>
 [__MultitaskDebiasMClassifier__](MultitaskDebiasMClassifier.html)<br>
 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;
 Implementation of multitask DEBIAS-M classifier<br>
 <br>
-For more background on DEBIAS-M, refer to the scikit-learn to [our manuscript](https://www.biorxiv.org/content/10.1101/2024.02.09.579716v1). 
+For more background on DEBIAS-M, refer to [our manuscript](https://www.biorxiv.org/content/10.1101/2024.02.09.579716v1). 
 
diff --git a/MultitaskDebiasMRegressor.html b/MultitaskDebiasMRegressor.html
@@ -666,11 +666,11 @@ <h2>Methods</h2>
 </style>
 <div class="seealso">
 <p><strong>See also:</strong><br> <a
-href="DebiasMRegressor.html"><strong>DEBIAS-M Regressor
-Demo</strong></a><br>        The single-task DEBIAS-M regressor<br> <a
+href="DebiasMRegressor.html"><strong>DEBIAS-MRegressor</strong></a><br>
+       The single-task DEBIAS-M regressor<br> <a
 href="MultitaskDebiasMClassifier.html"><strong>MultitaskDebiasMClassifier</strong></a><br>
        Implementation of multitask DEBIAS-M classifier<br> <br> For more
-background on DEBIAS-M, refer to the scikit-learn to <a
+background on DEBIAS-M, refer to <a
 href="https://www.biorxiv.org/content/10.1101/2024.02.09.579716v1">our
 manuscript</a>.</p>
 </div>

diff --git a/index.Rmd b/index.Rmd
@@ -73,15 +73,15 @@ DEBIAS-M contains classes for processing bias correction which integrate microbi
  * [__DebiasMClassifier__](DebiasMClassifier.html) - classification  
  * [__DebiasMRegressor__](DebiasMRegressor.html) - regression
  * [__MultitaskDebiasMClassifier__](MultitaskDebiasMClassifier.html) - multitask classification
- * [__MultitaskDebiasMClassifier__](MultitaskDebiasMClassifier.html) - multitask regression
+ * [__MultitaskDebiasMRegressor__](MultitaskDebiasMRegressor.html) - multitask regression
  * [__OnlineDebiasMClassifier__](OnlineDebiasMClassifier.html) - online adaptation
  * [__DebiasMClassifierLogAdd__](DebiasMClassifierLogAdd.html) - bias correction in logarithmic space
 
 <br>
 
-<div class='alert'>
-These `github.io` documentation pages are currently under development. While these will be completed soon, for the time being we recommend following the github `README.md`.
-</div>
+<!-- <div class='alert'> -->
+<!-- These `github.io` documentation pages are currently under development. While these will be completed soon, for the time being we recommend following the github `README.md`. -->
+<!-- </div> -->
 
 ## Installation
 

diff --git a/index.html b/index.html
@@ -429,7 +429,7 @@ <h1 class="title toc-ignore"><br><span
 href="MultitaskDebiasMClassifier.html"><strong>MultitaskDebiasMClassifier</strong></a>
 - multitask classification</li>
 <li><a
-href="MultitaskDebiasMClassifier.html"><strong>MultitaskDebiasMClassifier</strong></a>
+href="MultitaskDebiasMRegressor.html"><strong>MultitaskDebiasMRegressor</strong></a>
 - multitask regression</li>
 <li><a
 href="OnlineDebiasMClassifier.html"><strong>OnlineDebiasMClassifier</strong></a>
@@ -439,11 +439,9 @@ <h1 class="title toc-ignore"><br><span
 - bias correction in logarithmic space</li>
 </ul>
 <p><br></p>
-<div class="alert">
-<p>These <code>github.io</code> documentation pages are currently under
-development. While these will be completed soon, for the time being we
-recommend following the github <code>README.md</code>.</p>
-</div>
+<!-- <div class='alert'> -->
+<!-- These `github.io` documentation pages are currently under development. While these will be completed soon, for the time being we recommend following the github `README.md`. -->
+<!-- </div> -->
 <div id="installation" class="section level2">
 <h2>Installation</h2>
 <pre class="bashform"><code>pip install git+https://github.com/korem-lab/DEBIAS-M.git</code></pre>