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@labsyspharm

Laboratory of Systems Pharmacology @ Harvard

Reinventing the fundamental science underlying the development of new medicines and their use in individual patients.

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  1. ashlar ashlar Public

    ASHLAR: Alignment by Simultaneous Harmonization of Layer/Adjacency Registration

    Python 135 43

  2. mcmicro mcmicro Public

    Multiple-choice microscopy pipeline

    Nextflow 120 58

  3. scimap scimap Public

    Spatial Single-Cell Analysis Toolkit

    Python 85 28

  4. minerva-story minerva-story Public

    Minerva Story is an image viewer that is designed specifically to make it easy for non-expert users to interact with complex tissue images.

    HTML 50 14

  5. cylinter cylinter Public

    An Interactive Image Segmentation Filter for Multiplex Microscopy

    Python 28 12

  6. minerva_analysis minerva_analysis Public

    JavaScript 26 6

Repositories

Showing 10 of 158 repositories
  • omero-oauth Public Forked from microscopepony/omero-oauth

    OMERO.web application to allow OAuth2 login to OMERO

    labsyspharm/omero-oauth’s past year of commit activity
    Python 1 AGPL-3.0 4 0 0 Updated Feb 13, 2025
  • peripheral-neuropathy Public
    labsyspharm/peripheral-neuropathy’s past year of commit activity
    0 0 0 0 Updated Feb 12, 2025
  • cycif.org Public

    cycif.org GitHub Pages Website

    labsyspharm/cycif.org’s past year of commit activity
    JavaScript 2 MIT 9 5 4 Updated Feb 12, 2025
  • stic-ms-2024 Public

    Custom codes related to Kader, Lin, Hug manuscript 2024

    labsyspharm/stic-ms-2024’s past year of commit activity
    R 0 MIT 0 0 0 Updated Feb 7, 2025
  • ad-personalized Public
    labsyspharm/ad-personalized’s past year of commit activity
    R 0 MIT 0 0 0 Updated Feb 6, 2025
  • harvardtissueatlas Public

    Harvard Tissue Atlas website

    labsyspharm/harvardtissueatlas’s past year of commit activity
    SCSS 3 5 2 0 Updated Feb 5, 2025
  • mcmicro Public

    Multiple-choice microscopy pipeline

    labsyspharm/mcmicro’s past year of commit activity
    Nextflow 120 MIT 58 57 2 Updated Feb 1, 2025
  • cylinter Public

    An Interactive Image Segmentation Filter for Multiplex Microscopy

    labsyspharm/cylinter’s past year of commit activity
    Python 28 MIT 12 1 1 Updated Jan 31, 2025
  • vae-paper Public
    labsyspharm/vae-paper’s past year of commit activity
    Jupyter Notebook 2 MIT 2 0 0 Updated Jan 31, 2025
  • scimap Public

    Spatial Single-Cell Analysis Toolkit

    labsyspharm/scimap’s past year of commit activity
    Python 85 MIT 28 39 2 Updated Jan 27, 2025
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