Repositories list

• minerva-core-ui

  Public
  A microscopy viewer for non-experts

  TypeScript

  •

  MIT License

  •2•0•10•2•Updated Oct 8, 2024Oct 8, 2024

• ad-personalized

  Public
  R

  •0•0•0•0•Updated Oct 8, 2024Oct 8, 2024

• omero-oauth

  Public
  OMERO.web application to allow OAuth2 login to OMERO

  Python

  •

  GNU Affero General Public License v3.0

  •3•1•0•0•Updated Oct 7, 2024Oct 7, 2024

• palom

  Public
  Piecewise alignment for layers of mosaics

  Python

  •

  MIT License

  •4•19•4•2•Updated Oct 7, 2024Oct 7, 2024

• vae-paper

  Public
  Jupyter Notebook

  •

  MIT License

  •1•2•0•0•Updated Oct 4, 2024Oct 4, 2024

• ad-rna-editing

  Public
  R

  •0•0•0•0•Updated Oct 3, 2024Oct 3, 2024

• minerva-author-ui

  Public
  Minerva Author is an authoring tool used to create Minerva narrated stories via selection of specific channel groupings and image views.

  microscopyomeminerva+ 1immunofluorescence

  JavaScript

  •

  MIT License

  •5•4•2•4•Updated Oct 2, 2024Oct 2, 2024

• prostate

  Public
  Analysis of prostate cancer CyCIF data

  R

  •0•0•0•0•Updated Sep 30, 2024Sep 30, 2024

• stic-ms-2024

  Public
  Custom codes related to Kader, Lin, Hug manuscript 2024

  R

  •0•0•0•0•Updated Sep 27, 2024Sep 27, 2024

• okl-analysis

  Public
  Python

  •0•0•0•0•Updated Sep 25, 2024Sep 25, 2024

• harvardtissueatlas

  Public
  Harvard Tissue Atlas website

  SCSS

  •6•3•3•0•Updated Sep 24, 2024Sep 24, 2024

• beta-segmentinator

  Public
  Python

  •0•0•0•0•Updated Sep 20, 2024Sep 20, 2024

• gater

  Public
  JavaScript

  •

  MIT License

  •3•1•1•1•Updated Sep 16, 2024Sep 16, 2024

• minerva_analysis

  Public
  JavaScript

  •

  MIT License

  •6•25•21•4•Updated Sep 16, 2024Sep 16, 2024

• cycif.org

  Public
  cycif.org GitHub Pages Website

  JavaScript

  •

  MIT License

  •9•2•4•4•Updated Sep 12, 2024Sep 12, 2024

• mel-3d-mis

  Public
  MATLAB

  •1•0•0•0•Updated Sep 11, 2024Sep 11, 2024

• mcqc

  Public
  Quality control module for mcmicro

  Python

  •

  MIT License

  •0•0•0•0•Updated Sep 5, 2024Sep 5, 2024

• plateviewer

  Public
  Renders HTS microscopy image data into a Minerva Story for visual review

  Nextflow

  •

  MIT License

  •0•0•2•0•Updated Sep 3, 2024Sep 3, 2024

• ashlar

  Public
  ASHLAR: Alignment by Simultaneous Harmonization of Layer/Adjacency Registration

  Python

  •

  MIT License

  •42•122•52•12•Updated Sep 2, 2024Sep 2, 2024

• mcmicro

  Public
  Multiple-choice microscopy pipeline

  Nextflow

  •

  MIT License

  •58•104•57•3•Updated Sep 2, 2024Sep 2, 2024

• minerva-author

  Public
  Tool to create images and configuration files for Minerva-Story

  Python

  •

  MIT License

  •13•13•19•1•Updated Aug 30, 2024Aug 30, 2024

• scimap

  Public
  Spatial Single-Cell Analysis Toolkit

  pythonspatial-analysisimage-analysis+ 2single-cell-analysispypi

  Python

  •

  MIT License

  •25•73•33•2•Updated Aug 29, 2024Aug 29, 2024

• ludwigtumoratlas.org

  Public
  Ludwig Tumor Atlas website

  SCSS

  •1•1•0•1•Updated Aug 27, 2024Aug 27, 2024

• quantification

  Public
  Quantification module for mcmicro

  Python

  •13•9•6•1•Updated Aug 9, 2024Aug 9, 2024

• biospecimen-disease-research-terminology

  Public
  Clinical disease terminology for annotation of biospecimen records

  Python

  •

  MIT License

  •1•0•0•0•Updated Aug 2, 2024Aug 2, 2024

• minerva-ui-mockup

  Public
  Mockup design with Improved UI/UX for creating Minerva stories

  HTML

  •

  MIT License

  •0•0•0•0•Updated Jul 18, 2024Jul 18, 2024

• mcmicro-scanpy

  Public
  An MCMICRO module implementation of scanpy for clustering cells

  Python

  •5•1•0•1•Updated Jul 18, 2024Jul 18, 2024

• visinity

  Public
  JavaScript

  •

  MIT License

  •4•15•8•0•Updated Jun 27, 2024Jun 27, 2024

• Eddy

  Public
  The marker localization mapper and mask merger of the quantification folder (MCMICRO)

  Python

  •0•0•0•0•Updated Jun 4, 2024Jun 4, 2024

• 2024-05-29-python-programming

  Public
  Python

  •

  Other

  •0•0•0•0•Updated May 29, 2024May 29, 2024