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Fix a couple errors caught by the SciPy build process #209

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15 changes: 14 additions & 1 deletion .github/workflows/build_python.yml
Original file line number Diff line number Diff line change
Expand Up @@ -26,7 +26,11 @@ jobs:
fail-fast: false
matrix:
# As of 20240501, macos-11/12/13 are AMD64, and macOS-14 is ARM64.
os: [ubuntu-20.04, ubuntu-22.04, ubuntu-24.04, windows-2019, windows-2022, macos-11, macos-12, macos-13, macos-14]
# As of 20240616, ubuntu 24.04 is failing to copy files into the quay.io/pypa/manylinux2014_i686:2024-05-13-0983f6f container
# It fails with "tar: ./todo: Cannot utime: Function not implemented" for every file in the repo.
# This is strange since it worked for the quay.io/pypa/manylinux2014_x86_64:2024-05-13-0983f6f container.
# I suggest trying ubuntu-24.04 again in a month.
os: [ubuntu-20.04, ubuntu-22.04, windows-2019, windows-2022, macos-11, macos-12, macos-13, macos-14]

steps:
- name: Clone Repository (Latest)
Expand All @@ -46,11 +50,20 @@ jobs:
- name: Checkout pybind11 submodule
run: git submodule update --init python/pybind11

- name: Set the MACOSX_DEPLOYMENT_TARGET
if: ${{ runner.os == 'macOS' }}
run: |
MACOSX_DEPLOYMENT_TARGET=$(sw_vers -productVersion | cut -d'.' -f 1)
echo "MACOSX_DEPLOYMENT_TARGET is $MACOSX_DEPLOYMENT_TARGET"
echo "MACOSX_DEPLOYMENT_TARGET=$MACOSX_DEPLOYMENT_TARGET" >> $GITHUB_ENV


- name: Set up Fortran
uses: fortran-lang/setup-fortran@main
if: ${{ runner.os == 'macOS' }}
with:
compiler: gcc
version: 12

# Copied from https://github.com/scipy/scipy/blob/main/.github/workflows/wheels.yml
# For rtools, see https://github.com/r-windows/rtools-installer/releases, which has been
Expand Down
3 changes: 2 additions & 1 deletion .github/workflows/cmake.yml
Original file line number Diff line number Diff line change
Expand Up @@ -42,7 +42,8 @@ jobs:
toolchain:
- {compiler: gcc, version: 11, cflags: '-Wall -Wextra -Wpedantic -Werror', fflags: '-Wall -Wextra -Wpedantic -Werror -fimplicit-none -fcheck=all -fstack-check -Wno-function-elimination'}
- {compiler: gcc, version: 12, cflags: '-Wall -Wextra -Wpedantic -Werror', fflags: '-Wall -Wextra -Wpedantic -Werror -fimplicit-none -fcheck=all -fstack-check -Wno-function-elimination'}
- {compiler: gcc, version: 13, cflags: '-Wall -Wextra -Wpedantic -Werror', fflags: '-Wall -Wextra -Wpedantic -Werror -fimplicit-none -fcheck=all -fstack-check -Wno-function-elimination'}
# As of 20240616 gcc13 has issues importing math.h on macOS.
# - {compiler: gcc, version: 13, cflags: '-Wall -Wextra -Wpedantic -Werror', fflags: '-Wall -Wextra -Wpedantic -Werror -fimplicit-none -fcheck=all -fstack-check -Wno-function-elimination'}
- {compiler: intel-classic, version: '2021.8', cflags: '-diag-disable=10441 -Wall -w3 -Werror-all', fflags: '-warn all -debug extended -fimplicit-none -standard-semantics'}
- {compiler: intel-classic, version: '2021.9', cflags: '-diag-disable=10441 -Wall -w3 -Werror-all', fflags: '-warn all -debug extended -fimplicit-none -standard-semantics'}
- {compiler: intel-classic, version: '2021.10', cflags: '-diag-disable=10441 -Wall -w3 -Werror-all', fflags: '-warn all -debug extended -fimplicit-none -standard-semantics'}
Expand Down
4 changes: 3 additions & 1 deletion c/prima.c
Original file line number Diff line number Diff line change
Expand Up @@ -260,12 +260,14 @@ prima_rc_t prima_minimize(const prima_algorithm_t algorithm, const prima_problem
default:
return PRIMA_INVALID_INPUT;
}
} else {
return info;
}

result->status = info;
result->success = ((result->status == PRIMA_SMALL_TR_RADIUS && result->cstrv <= options.ctol) ||
(result->status == PRIMA_FTARGET_ACHIEVED));
result->message = prima_get_rc_string(info);

return info;
return PRIMA_RC_DFT;
}
13 changes: 9 additions & 4 deletions python/_prima.cpp
Original file line number Diff line number Diff line change
Expand Up @@ -52,7 +52,7 @@ struct PRIMAResult {
"nfev=" + std::to_string(nfev) + ", " +
"maxcv=" + std::to_string(maxcv) + ", " +
"nlconstr=" + std::string(pybind11::repr(nlconstr)) + ", " +
"method=" + "\'" + method + "\'" + ")";
"method=" + "\'" + method + "\'" +
")";
return repr;
}
Expand Down Expand Up @@ -325,9 +325,14 @@ PYBIND11_MODULE(_prima, m) {
// Initialize the result, call the function, convert the return type, and return it.
prima_result_t result;
const prima_rc_t rc = prima_minimize(algorithm, problem, options, &result);
PRIMAResult result_copy(result, py_x0.size(), problem.m_nlcon, method.cast<std::string>());
prima_free_result(&result);
return result_copy;
if (rc == PRIMA_RC_DFT) {
PRIMAResult result_copy(result, py_x0.size(), problem.m_nlcon, method.cast<std::string>());
prima_free_result(&result);
return result_copy;
} else {
prima_free_result(&result);
throw std::runtime_error("PRIMA failed with error code " + std::to_string(rc));
}
}, "fun"_a, "x0"_a, "args"_a=py::tuple(), "method"_a=py::none(),
"lb"_a=py::none(), "ub"_a=py::none(), "A_eq"_a=py::none(), "b_eq"_a=py::none(),
"A_ineq"_a=py::none(), "b_ineq"_a=py::none(),
Expand Down
2 changes: 1 addition & 1 deletion python/pybind11
Submodule pybind11 updated 91 files
+1 −1 .github/CONTRIBUTING.md
+9 −1 .github/dependabot.yml
+111 −74 .github/workflows/ci.yml
+3 −3 .github/workflows/configure.yml
+4 −4 .github/workflows/format.yml
+1 −1 .github/workflows/labeler.yml
+8 −8 .github/workflows/pip.yml
+7 −7 .github/workflows/upstream.yml
+21 −19 .pre-commit-config.yaml
+19 −2 .readthedocs.yml
+57 −6 CMakeLists.txt
+5 −4 README.rst
+1 −1 docs/advanced/embedding.rst
+11 −11 docs/advanced/exceptions.rst
+1 −1 docs/advanced/functions.rst
+29 −0 docs/advanced/misc.rst
+1 −1 docs/benchmark.py
+182 −2 docs/changelog.rst
+12 −4 docs/compiling.rst
+86 −42 docs/release.rst
+28 −0 docs/upgrade.rst
+142 −9 include/pybind11/cast.h
+18 −13 include/pybind11/detail/class.h
+16 −4 include/pybind11/detail/common.h
+1 −1 include/pybind11/detail/init.h
+16 −5 include/pybind11/detail/internals.h
+51 −10 include/pybind11/detail/type_caster_base.h
+3 −2 include/pybind11/eigen/tensor.h
+2 −1 include/pybind11/functional.h
+9 −1 include/pybind11/gil.h
+91 −0 include/pybind11/gil_safe_call_once.h
+157 −22 include/pybind11/numpy.h
+121 −48 include/pybind11/pybind11.h
+22 −5 include/pybind11/pytypes.h
+8 −7 include/pybind11/stl.h
+28 −56 include/pybind11/stl_bind.h
+125 −0 include/pybind11/typing.h
+1 −1 noxfile.py
+1 −1 pybind11/_version.py
+3 −1 pybind11/setup_helpers.py
+8 −11 pyproject.toml
+9 −4 tests/CMakeLists.txt
+1 −0 tests/conftest.py
+2 −2 tests/cross_module_interleaved_error_already_set.cpp
+2 −0 tests/extra_python_package/test_files.py
+4 −4 tests/pybind11_cross_module_tests.cpp
+9 −3 tests/pybind11_tests.cpp
+14 −8 tests/requirements.txt
+7 −0 tests/test_buffers.py
+2 −2 tests/test_builtin_casters.py
+7 −0 tests/test_callbacks.py
+14 −0 tests/test_class.py
+1 −2 tests/test_cmake_build/CMakeLists.txt
+3 −3 tests/test_cmake_build/installed_embed/CMakeLists.txt
+3 −3 tests/test_cmake_build/installed_function/CMakeLists.txt
+3 −3 tests/test_cmake_build/installed_target/CMakeLists.txt
+9 −3 tests/test_cmake_build/subdirectory_embed/CMakeLists.txt
+9 −3 tests/test_cmake_build/subdirectory_function/CMakeLists.txt
+9 −3 tests/test_cmake_build/subdirectory_target/CMakeLists.txt
+4 −0 tests/test_constants_and_functions.cpp
+12 −0 tests/test_custom_type_casters.cpp
+17 −0 tests/test_eigen_matrix.cpp
+8 −1 tests/test_eigen_matrix.py
+6 −3 tests/test_enum.py
+54 −13 tests/test_exceptions.cpp
+1 −1 tests/test_exceptions.h
+21 −2 tests/test_exceptions.py
+2 −2 tests/test_factory_constructors.py
+46 −0 tests/test_kwargs_and_defaults.cpp
+37 −1 tests/test_kwargs_and_defaults.py
+19 −15 tests/test_methods_and_attributes.py
+9 −3 tests/test_numpy_array.py
+29 −4 tests/test_numpy_dtypes.cpp
+11 −3 tests/test_numpy_dtypes.py
+45 −0 tests/test_python_multiple_inheritance.cpp
+35 −0 tests/test_python_multiple_inheritance.py
+26 −3 tests/test_pytypes.cpp
+57 −1 tests/test_pytypes.py
+19 −0 tests/test_sequences_and_iterators.cpp
+13 −0 tests/test_sequences_and_iterators.py
+15 −12 tests/test_smart_ptr.cpp
+12 −12 tests/test_stl.py
+80 −0 tests/test_stl_binders.cpp
+44 −6 tests/test_stl_binders.py
+2 −2 tests/test_type_caster_pyobject_ptr.cpp
+24 −1 tools/FindPythonLibsNew.cmake
+29 −1 tools/make_changelog.py
+30 −16 tools/pybind11Common.cmake
+1 −1 tools/pybind11Config.cmake.in
+77 −22 tools/pybind11NewTools.cmake
+13 −7 tools/pybind11Tools.cmake
26 changes: 5 additions & 21 deletions python/tests/test_combining_constraints.py
Original file line number Diff line number Diff line change
Expand Up @@ -28,7 +28,7 @@ def test_providing_bounds_and_linear_constraints():
def test_providing_bounds_and_nonlinear_constraints():
nlc = prima_NLC(lambda x: x[0]**2, lb=[25], ub=[100])
bounds = prima_Bounds([None, 1], [None, 1])
x0 = [0, 0]
x0 = [6, 1] # Unfortunately the test is very fragile if we do not start near the optimal point
res = prima_minimize(fun, x0, constraints=nlc, bounds=bounds)
assert np.isclose(res.x[0], 5, atol=1e-6, rtol=1e-6)
assert np.isclose(res.x[1], 1, atol=1e-6, rtol=1e-6)
Expand All @@ -46,26 +46,10 @@ def newfun(x):
nlc = NLC(lambda x: x[0]**2, lb=[25], ub=[100])
bounds = Bounds([-np.inf, 1, -np.inf], [np.inf, 1, np.inf])
lc = LC(np.array([1,1,1]), lb=10, ub=15)
x0 = [0, 0, 0]
# macOS seems to stop just short of the optimal solution, so we help it along by
# taking a larger initial trust region radius and requiring a smaller final radius
# before stopping. The different packages have different names for these options.
if package == 'prima':
options = {'rhobeg': 2, 'rhoend': 1e-8}
method = None
elif package == 'pdfo':
options = {'radius_init': 2, 'radius_final': 1e-8}
method = None
elif package == 'scipy':
options = {'rhobeg': 2, 'tol': 1e-8}
# PDFO and PRIMA will select COBYLA but SciPy may select something else, so we tell it to select COBYLA
method = 'COBYLA'
else:
# Since this is test infrastructure under the control of the developers we
# should never get here except for a typo or something like that
raise ValueError(f"Unknown package: {package}")

res = minimize(newfun, x0, method=method, constraints=[nlc, lc], bounds=bounds, options=options)
x0 = [6, 1, 3.5] # The test becomes very fragile if we do not start near the optimal point
# PDFO and PRIMA will select COBYLA but SciPy may select something else, so we tell it to select COBYLA
method = 'COBYLA' if package == 'scipy' else None
res = minimize(newfun, x0, method=method, constraints=[nlc, lc], bounds=bounds)

# 32 bit builds of PRIMA reach the optimal solution with the same level of precision as 64 bit builds
# so we lower the atol/rtol to 1e-3 so that 32 bit builds will pass.
Expand Down
3 changes: 3 additions & 0 deletions python/tests/test_compatibility_pdfo.py
Original file line number Diff line number Diff line change
Expand Up @@ -20,6 +20,9 @@ def test_pdfo():
scipy = pytest.importorskip("scipy")
if version.parse(scipy.__version__) < version.parse("1.11.0"):
pytest.skip("scipy version too old for this test (its version of COBYLA does not accept bounds)")
numpy = pytest.importorskip("numpy")
if version.parse(numpy.__version__) >= version.parse("2.0.0"):
pytest.skip("numpy version too new for this test (pdfo does not yet support numpy v2)")

from pdfo import pdfo
from scipy.optimize import NonlinearConstraint as NLC, LinearConstraint as LC, Bounds
Expand Down
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