Update config, remove deployment, add revoke cronjob

ingest/Snakefile

@@ -446,8 +446,8 @@ rule approve:
         log_level=LOG_LEVEL,
     shell:
         """
-        python {input.script} \
+        timeout 25m bash -c "python {input.script} \
             --mode approve \
             --config-file {input.config} \
-            --log-level {params.log_level} \
+            --log-level {params.log_level}" \
         """

kubernetes/loculus/templates/ingest-deployment.yaml

@@ -97,11 +97,12 @@ spec:
                       name: service-accounts
                       key: insdcIngestUserPassword
               args:
-                - timeout
-                - 25m
-                - bash 
-                - -c
-                - "snakemake results/submitted results/revised results/revoked results/approved --all-temp" # Reduce disk usage by not keeping files around
+                - snakemake
+                - results/submitted
+                - results/revised
+                - results/revoked
+                - results/approved
+                - --all-temp # Reduce disk usage by not keeping files around
           {{- if $value.ingest.configFile }}
               volumeMounts:
                 - name: loculus-ingest-config-volume-{{ $key }}