Fixes for i2MAP processing after M3 move to thalassa in 2025

.vscode/launch.json

@@ -200,7 +200,7 @@
             // Zero-sized seabird .log file in 2021.307.02
             //"args": ["-v", "1", "--mission", "2022.094.01", "--noinput", "--local"],
             //"args": ["-v", "1", "--local", "--noinput"],
-            //"args": ["-v", "1", "--last_n_days", "80", "--clobber", "--noinput"]
+            //"args": ["-v", "1", "--last_n_days", "30", "--num_cores", "1", "--noinput"]
             //"args": ["-v", "1", "--mission", "2022.061.01", "--calibrate", "--noinput"],
             //"args": ["-v", "1", "--mission", "2022.061.01", "--align", "--noinput"],
             //"args": ["-v", "1", "--mission", "2022.061.01", "--resample", "--noinput"],
@@ -213,7 +213,8 @@
             //"args": ["-v", "1", "--mission", "2019.190.00", "--noinput", "--no_cleanup"],
             //"args": ["-v", "1", "--mission", "2018.065.02", "--noinput", "--no_cleanup"],
             //"args": ["-v", "1", "--mission", "2018.348.01", "--noinput", "--no_cleanup", "--clobber"],
-            "args": ["-v", "1", "--mission", "2024.324.00", "--noinput"],
+            //"args": ["-v", "1", "--mission", "2024.324.00", "--noinput"],
+            "args": ["-v", "1", "--mission", "2025.030.00", "--noinput"],
         },
         {
             "name": "process_dorado",

WORKFLOW.md

@@ -72,4 +72,4 @@ on the local file system's work directory is as follows:
         Copy the netCDF files to the archive directory. The archive directory
         is initally in the AUVCTD share on atlas which is shared with the
         data from the Dorado Gulper vehicle, but can also be on the M3 share
-        on titan near the original log data.
+        on thalassa near the original log data.

src/data/archive.py

@@ -3,7 +3,7 @@
 Archive processed data to relevant repositories.
 
 Use smb://atlas.shore.mbari.org/AUVCTD for STOQS loading.
-Use smb://titan.shore.mbari.org/M3 for paring with original data.
+Use smb://thalassa.shore.mbari.org/M3 for paring with original data.
 """
 
 __author__ = "Mike McCann"

src/data/calibrate.py

@@ -1118,6 +1118,7 @@ def _cal_date_xml_files(
                         root.find("CalibrationDate").text[:-1],
                         "%d-%b-%y",
                     ).replace(tzinfo=timezone.utc)
+                else:
                     error_message = (
                         f"Cannot parse CalibrationDate {root.find('CalibrationDate').text}"
                     )

src/data/process.py

@@ -83,7 +83,7 @@ def __init__(self, vehicle, vehicle_dir, mount_dir, calibration_dir) -> None:
         # Variables to be set by subclasses, e.g.:
         # vehicle = "i2map"
         # vehicle_dir = "/Volumes/M3/master/i2MAP"
-        # mount_dir = "smb://titan.shore.mbari.org/M3"
+        # mount_dir = "smb://thalassa.shore.mbari.org/M3"
         self.vehicle = vehicle
         self.vehicle_dir = vehicle_dir
         self.mount_dir = mount_dir
@@ -826,7 +826,7 @@ def process_command_line(self):
     VEHICLE = "i2map"
     VEHICLE_DIR = "/Volumes/M3/master/i2MAP"
     CALIBRATION_DIR = "/Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files"
-    MOUNT_DIR = "smb://titan.shore.mbari.org/M3"
+    MOUNT_DIR = "smb://thalassa.shore.mbari.org/M3"
 
     # Initialize for i2MAP processing, meant to be subclassed for other vehicles
     proc = Processor(VEHICLE, VEHICLE_DIR, MOUNT_DIR, CALIBRATION_DIR)

src/data/process_i2map.py

@@ -2,7 +2,7 @@
 """
 Scan master/i2MAP directory and process all missions found there
 
-Find all the i2MAP missions in smb://titan.shore.mbari.org/M3/master/i2MAP
+Find all the i2MAP missions in smb://thalassa.shore.mbari.org/M3/master/i2MAP
 and run the data through standard science data processing to calibrated,
 aligned, and resampled netCDF files.  Use a standard set of processing options;
 more flexibility is available via the inndividual processing modules.
@@ -32,7 +32,7 @@ class I2mapProcessor(Processor):
     VEHICLE = "i2map"
     VEHICLE_DIR = "/Volumes/M3/master/i2MAP"
     CALIBRATION_DIR = "/Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files"
-    MOUNT_DIR = "smb://titan.shore.mbari.org/M3"
+    MOUNT_DIR = "smb://thalassa.shore.mbari.org/M3"
     START_YEAR = 2017
 
     proc = I2mapProcessor(VEHICLE, VEHICLE_DIR, MOUNT_DIR, CALIBRATION_DIR)