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mikolmogorov committed Sep 19, 2019
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6 changes: 5 additions & 1 deletion README.md
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Expand Up @@ -3,7 +3,7 @@ Flye assembler

[![BioConda Install](https://img.shields.io/conda/dn/bioconda/flye.svg?style=flag&label=BioConda%20install)](https://anaconda.org/bioconda/flye)

### Version: 2.5
### Version: 2.6

Flye is a de novo assembler for single molecule sequencing reads,
such as those produced by PacBio and Oxford Nanopore Technologies.
Expand All @@ -15,6 +15,10 @@ Flye also includes a special mode for metagenome assembly.
Latest updates
--------------

Flye 2.6 release (19 Sep 2019)
==============================
* This release introduces Python 3 support (no other changes)

### Flye 2.5 release (25 Jul 2019)
* Better ONT polishing for the latest basecallers (Guppy/flipflop)
* Improved consensus quality of repetitive regions
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17 changes: 8 additions & 9 deletions docs/INSTALL.md
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Expand Up @@ -19,11 +19,11 @@ Alternatively, you can get a release version from the github releases page
Building Requirements
---------------------

* Python 2.7 or 3.5+ (with setuptools package installed)
* C++ compiler with C++11 support (GCC 4.8+ / Clang 3.3+ / Apple Clang 5.0+)
* GNU make
* Python 2.7 or 3.4+ with setuptools package installed
* Git
* Core OS development headers (zlib, etc)
* Core OS development headers (zlib, ...)


Local building (without installation)
Expand All @@ -38,10 +38,7 @@ To get and compile the latest git version, run:

Then, Flye will be available as:

python3 bin/flye

This example is using Python 3, replace ```python3```
with ```python2``` to use the 2nd version.
python bin/flye


Installing from source
Expand All @@ -51,14 +48,16 @@ To install the Flye package into your system, run:

git clone https://github.com/fenderglass/Flye
cd Flye
python3 setup.py install
python setup.py install

Depending on your OS, you might need to add
```--user``` or ```--prefix``` options to the
install command for the local installation.

This example is using Python 3, replace ```python3```
with ```python2``` to use the 2nd version.
After installation, Flye could be invoked via:

flye

Optionally, run some tests to ensure that installation was successful:

python flye/tests/test_toy.py
4 changes: 4 additions & 0 deletions docs/NEWS.md
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Flye 2.6 release (19 Sep 2019)
==============================
* This release introduces Python 3 support (no other changes)

Flye 2.5 release (25 Jul 2019)
==============================
* Better ONT polishing for the latest basecallers (Guppy/flipflop)
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2 changes: 1 addition & 1 deletion flye/__version__.py
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__version__ = "2.5"
__version__ = "2.6"

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