Fix number of runfolders processed not being correctly added to scrip…

…t end log
moka-guys · Jul 9, 2024 · 4fd486c · 4fd486c
1 parent 9c62af9
commit 4fd486c
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Showing 2 changed files with 3 additions and 2 deletions.
diff --git a/config/ad_config.py b/config/ad_config.py
@@ -45,7 +45,7 @@
         "pipeline_started_subj": f"{SCRIPT_MODE}. ALERT: Started pipeline for %s",
         "binfx_recipient": MAIL_SETTINGS["binfx_email"],
         # Oncology email address for email alerts
-        "oncology_ops_email": "synnovis.OncologyDutyScientist@nhs.net",
+        "oncology_ops_email": "synnovis.seglh-ods@nhs.net",
         "wes_samplename_emaillist": [
             "gst-tr.ViapathGeneticsAdmin@nhs.net",
             "lu.liu@viapath.co.uk",
@@ -64,7 +64,7 @@
     AD_LOGDIR = os.path.join(RUNFOLDERS, "automate_demultiplexing_logfiles")
     MAIL_SETTINGS = MAIL_SETTINGS | {  # Add test mail recipients
         "pipeline_started_subj": f"{SCRIPT_MODE}. ALERT: Started pipeline for %s",
-        "binfx_recipient": "mokaguys@gmail.com",
+        "binfx_recipient": MAIL_SETTINGS["binfx_email"],
         # Oncology email address for email alerts
         "oncology_ops_email": "mokaguys@gmail.com",
         "wes_samplename_emaillist": ["mokaguys@gmail.com"],

diff --git a/demultiplex/demultiplex.py b/demultiplex/demultiplex.py
@@ -131,6 +131,7 @@ def check_run_processed(self, dr_obj: object, runfolder_name: str) -> None:
                 script_logger.log_msgs["script_success"],
                 runfolder_name,
             )
+            return True
 
 class DemultiplexRunfolder(DemultiplexConfig):
     """