Available Metrics

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Jouke Profijt edited this page Feb 17, 2020 · 1 revision

While digging through the available data a few files were found to possibly contain quality metrics that could be used to perform correlation analysis on

Produced metrics per sample

alignment_summary_metrics
bam_index_stats
flagstat
gc_bias_metrics
hs_metrics
insert_size_metrics
nonAutosomalRegionChrX_hs_metrics
quality_by_cycle_metrics
quality_distribution_metrics

InterOp

correctedIntMetricsOut.bin
ExtractionMetricsOut.bin
EmpiricalPhasingMetricsOut.bin
QMetricsOut.bin
TileMetricsOut.bin
PFGridMetricsOut.bin
EventMetricsOut.bin
RegistrationMetricsOut.bin