Welcome to the course website for the Bioinformatics & Systems Biology Fall Quarter 2021 Bootcamp for incoming students to our doctoral program!
This course is entirely taught by graduate students! There are three main instructors for the course from the Bioinformatics & Systems Biology program. The main instructors teach the majority of "learning modules", along with lectures that contain helpful graduate school knoweldge. There are also quite a few guest instructors that will also be joining the course!
| Name | Email Address | Year and Track in BISB | Advisor |
|---|---|---|---|
| Cameron Martino | cmartino@eng.ucsd.edu | 4th Year, Bioinformatics & Systems Biology | Rob Knight |
| Michelle Franc Ragsac | mragsac@eng.ucsd.edu | 4th Year, Bioinformatics & Systems Biology | Emma Farley |
| Mike Cuoco | mcuoco@ucsd.edu | 2nd Year, Bioinformatics & Systems Biology | Rusty Gage |
| Lauryn Bruce | lbruce@ucsd.edu | 2nd Year, Biomedical Informatics Program | Lucila Ohno Machado, Benjamin Smarr |
| Name | Module Name | Year and Track in BISB | Advisor |
|---|---|---|---|
| Alexander Wenzel | Ph.D. Speed Dating: How to Choose an Advisor | 5th Year, Biomedical Informatics | Jill Mesirov |
| Gibraan Rahman | Module 5: Introduction to Statistics | 4th Year, Bioinformatics & Systems Biology | Rob Knight |
| Clarence Mah | Module 6: Introduction to Bioinformatics - RNA-Seq Demo | 4th Year, Bioinformatics & Systems Biology | Gene Yeo, Hannah Carter |
This week-long Bootcamp aims to:
- Introduce new students to the Bioinformatics & Systems Biology program, its faculty and students, and research opportunities at the University of California, San Diego
- Foster student community and collaboration among students of the first-year class and to students in upper classes
- Convey the bar for the core curriculum and key classes, as well as the research excitement and work ethic characteristic of the program's best students
- Provide incoming students with an opportunity to remedy deficiencies before taking the core classes
The complete schedule for this year's Bootcamp can be found at the following link: https://docs.google.com/document/d/1XckTRyl-kSp9_tvGUSm5NuNKDFrgt9FAwGGqQgjypWg/edit?usp=sharing.
Additionally, each day# folder within this repo has the schedule for that specific day.
You may also find folders containing each day's recordings at the following link: https://drive.google.com/drive/folders/1mZ6MihUQiyV55XpJ6NUhqGKwPk810ir4?usp=sharing. However, this folder has restricted access, so in order to view the recordings, you must request access using the email which you would like to view the recordings from.
. BISB-Bootcamp-2021/
├── README.md
├── day1/
│ ├── README.md
│ ├── module1a_coding-for-biologists/
│ ├── module1b_genetics-101/
│ └── presentations/
├── day2/
│ ├── README.md
│ ├── module2_genomic-technologies/
│ ├── module3a_programming-101/
│ ├── module3b_how-the-sausage-is-made/
│ └── presentations/
├── day3/
│ ├── README.md
│ ├── module4_introduction-to-hpc/
│ ├── module5_introduction-to-statistics/
│ └── presentations/
├── day4/
│ ├── README.md
│ ├── module6_bioinformatics-data-wrangling/
│ ├── module7_pair-programming/
│ ├── module8_machine-learning/
│ └── presentations/
├── day5/
│ ├── README.md
│ ├── module9_software-engineering/
│ └── presentations/
└── module0_welcome-to-bootcamp/
├── README.md
└── summer-PI-talk-series/
23 directories, 7 files
Within this repository, each day of the BISB Bootcamp is separated into its own folder and its own README.md file. From there, the educational modules for that day are in their separate folders. Presentations given by the BISB Bootcamp Instructors and guest speakers will be located in the presentations/ folder and updated as we obtain slide decks and/or presentation links.
- Bioinformatics & Systems Biology Program website: https://bioinformatics.ucsd.edu/
- University of California, San Diego Gradaute Division website: https://grad.ucsd.edu/
- University of California, San Diego Current Student portal: https://students.ucsd.edu/